Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1864 127 5e-27 seq3048 100 7e-19 >seq1864 Length=48117 Score = 127 bits (140), Expect = 5e-27 Identities = 128/165 (78%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90 |||| ||||| | | || |||| | |||| |||||| || |||||| ||| || ||| Sbjct 11136 CACGAGGCATTGGTCTATTAGGCGTTCGCC-ATTGTGGAAAATTCCCAACTACTCCCTTT 11194 Query 91 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 |||||||||| | |||||||||| | ||| ||||||| ||||||||||| | ||||||| Sbjct 11195 TGTAGGAGTCTAGGCCGTGTCTCAATCCCATTGTGGCTAGTCATCCTCTCGGGCCAGCTA 11254 Query 151 GGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 |||| |||||| || | ||||| | |||||||||||||| Sbjct 11255 ATGATCATCGCCTTAGTAAGTTATTACGTCACCAACTAGCTAATC 11299 >seq3048 Length=42825 Score = 100 bits (110), Expect = 7e-19 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 79 ACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTC 138 ||||||||||||||||||||| ||| ||| ||| | ||| |||||||| ||| ||| Sbjct 29983 ACTGCTGCCTCCCGTAGGAGTTTGGGTCGTAACTCTATCCCACTGTGGCTGACCATGCTC 29924 Query 139 TCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCC 196 |||||||||||| || | || ||| || || |||||| | |||||||||||||| Sbjct 29923 TCAGACCAGCTACTGACCATCACCTTAGTAAGCTATTACCTCAGCAACTAGCTAATCC 29866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1220965635840