Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1864 132 1e-28 seq3048 107 6e-21 >seq1864 Length=48117 Score = 132 bits (146), Expect = 1e-28 Identities = 142/184 (77%), Gaps = 3/184 (2%) Strand=Plus/Minus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 ||||||||||||||||||| | |||| ||||| ||||||| ||||| |||| | || | Sbjct 11303 GTCTGATTAGCTAGTTGGTGACGTAATAACTTACTAAGGCGATGATCATTAGCTGGCCCG 11244 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 ||||| ||| |||||| ||| | |||||||||| | | |||||||| ||| || || Sbjct 11243 AGAGGATGACTAGCCACAATGGGATTGAGACACGGCCTAGACTCCTACAAAAGGGAGTAG 11184 Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGA-TGAAG 341 | |||||| || |||||| ||| || |||| || | ||| ||| |||| | || |||| Sbjct 11183 TTGGGAATTTTCCACAAT-GGCGAACGCCTAATAGACCAATGCCTCGTG-GAGATTGAAC 11126 Query 342 GCCT 345 |||| Sbjct 11125 GCCT 11122 >seq3048 Length=42825 Score = 107 bits (118), Expect = 6e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 ||||||||||||| | |||||| |||||| |||| || | |||||||| | ||||||| Sbjct 29867 GATTAGCTAGTTGCTGAGGTAATAGCTTACTAAGGTGATGGTCAGTAGCTGGTCTGAGAG 29926 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 || || |||||| ||| | ||| ||| ||||||||||||||||||||||||| Sbjct 29927 CATGGTCAGCCACAGTGGGATAGAGTTACGACCCAAACTCCTACGGGAGGCAGCAGT 29983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1495842716160