Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq7113 123 2e-23 seq14392 84.2 2e-11 >seq7113 Length=4078 Score = 123 bits (136), Expect = 2e-23 Identities = 249/369 (67%), Gaps = 3/369 (1%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| ||||||||||||| || || || ||| | || |||| Sbjct 76 ATGTACAAGAAAGCTGAAGCGTCCTTCTGGACGGCAGAAGAAGTTGATCTTTCACAAGAT 135 Query 61156 ATGAATGACTGGGAGCG---TTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTG 61212 | | |||||| |||| | || ||||||||||||||||| || || | Sbjct 136 CTACGCCATTGGGAGACATCTTTAACTTCCGATGAACAACATTTCATTACCCACGTTCTT 195 Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272 || |||||||| ||||| || ||||| || ||| ||| | | |||||| | | Sbjct 196 GCTTTCTTTGCTGCTTCTGATGGTATTGTTCTTGAAAATCTTGCTAATCGTTTCATGAAA 255 Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332 ||| | ||||| || || || ||| || ||||||||||| || ||||| || || || Sbjct 256 GAGATTCAAGTCTCTGAAGCCCGTGCGTTTTACGGCTTCCAAATCGCCATTGAAAACATC 315 Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAA 61392 || || || ||||| | | ||| | || || ||||| | || | || | Sbjct 316 CATTCCGAAATGTATTCTCTCCTCTTAGAAACCTACATAAAAGACTCTGTTCAAAAAACA 375 Query 61393 CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTC 61452 ||||| ||| ||| || || || || || || ||| |||||| || |||||||| Sbjct 376 CGATTATTCCGTGCAATTGAAACAATCCCTTGTGTAAAGAAGAAAGCCGACTGGGCCTTA 435 Query 61453 AATTGGATC 61461 | |||||| Sbjct 436 AGATGGATC 444 >seq14392 Length=19752 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/187 (71%), Gaps = 3/187 (2%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGC-CTTGGTCCTAAGATAGTACATGCCGG 65135 |||||| || |||| ||| |||| |||||| || | || || ||| ||| |||||||| | Sbjct 18665 ATCGACAGTAAACTTGATAGCATCAGCAGCTGCTCGTGTTCTTAA-ATAATACATGCCTG 18607 Query 65136 TCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCT 65195 |||| | || | ||| ||||||||||||| || | | |||| | |||| || | Sbjct 18606 TCTTCAAACCCTTATTCCAGGCATAGAAATGCAGAGAAGTGAGTTTTCCGAAATTGGGTT 18547 Query 65196 -CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCC 65254 ||| ||| ||||||| || || ||||| || ||| || ||||| |||||| Sbjct 18546 GATNCCATATGAATATTCAGGCTTTGGCTTTGATCTATAAAACATCCGCGATCAGCAGCC 18487 Query 65255 ATGTCAA 65261 || |||| Sbjct 18486 ATATCAA 18480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396999445457600