Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq21925 95.1 1e-14 seq3507 86.0 7e-12 >seq21925 Length=4909 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 160960 GATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGT 161019 |||||| || ||||||| | || || |||| || |||| ||| ||||| || Sbjct 4407 GATGATTGTTACATCCTTGATTCAGCCGAGCAAGCGGGGCTTGAGCTACCGTACTCATGC 4466 Query 161020 CGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCT 161079 | || ||||| ||||| ||||||||||| || | || ||||| ||||| |||||||| Sbjct 4467 AGGGCAGGTGCCTGCTCAACTTGTGCTGGGCAGCTCGAAAGTGGAACTGTGGATCAATCG 4526 Query 161080 GATCAATCTTTCCTGGATGATGATCAA 161106 ||| |||||| |||||||| ||||| Sbjct 4527 GATGGATCTTTTCTGGATGAAAATCAA 4553 >seq3507 Length=58984 Score = 86.0 bits (94), Expect = 7e-12 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 160973 TCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTT 161032 ||||||| || || || ||||| || |||| || ||||| ||| | || ||||||| Sbjct 8678 TCCTTGATGCAGCCGAGGAAGCTGGGATTGATCTGCCATACTCATGTAGGGCAGGTGCTT 8619 Query 161033 GCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCTTTCC 161092 |||| || |||||||| ||| | || ||| || || ||||| || || ||| |||| Sbjct 8618 GCTCAACCTGTGCTGGAAAGCTCGAATCTGGAACAGTTGATCAGTCAGACGGATCCTTCC 8559 Query 161093 TGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCC 161144 | ||||| | ||||| || || | | | ||||| || ||| |||| || Sbjct 8558 TCGATGACAACCAACTCGAGAATGGTTATTTGCTGACATGTGTTTCTTACCC 8507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 550567269252000