Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2 235 1e-59 >seq2 Length=6919 Score = 235 bits (260), Expect = 1e-59 Identities = 204/249 (82%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCA 129 ||| |||||||||| ||||||||||| |||||||| || | |||| | ||||||||||| Sbjct 1733 ACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCATACGCTCTGTATACATTAGCA 1792 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 ||| |||| | |||||| | |||| ||||| |||||| | ||| || ||||||| Sbjct 1793 TGGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGA 1851 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| ||||| ||||||||| | ||||| || ||||||||||||||||||||||||| Sbjct 1852 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 1911 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | ||||| ||| ||||||||||| || |||||||||||||||||||||| ||||||| Sbjct 1912 TGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAA 1970 Query 310 AGTTAGGGG 318 |||| |||| Sbjct 1971 AGTTGGGGG 1979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915058693120