Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2 241 5e-61 >seq2 Length=6919 Score = 241 bits (266), Expect = 5e-61 Identities = 224/281 (80%), Gaps = 4/281 (1%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 |||||||||||| ||||||||||||||||||| |||| | ||||||| ||| | | Sbjct 4064 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCGAGTA 4123 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522 ||||||| || || || ||| | | || || | ||| || ||||||||| |||| Sbjct 4124 AACCCGTACGGCGCAAGGAAGCTAATTGGCGG--GATCCCCTTGTGGGTGCACCGCCGAC 4181 Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 ||| | |||| | | || || || |||| |||||||| |||| ||||||||||||||| Sbjct 4182 CGACCTTGATCTTCTGAGAAGGGTTCGAGTGAGAGCATACCTGTCGGGACCCGAAAGATG 4241 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 ||||||||||||||| ||| ||||||||||||||||||||||||||| || |||| | Sbjct 4242 GTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGAAGCGATA 4301 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 4302 CTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 4342 Score = 167 bits (184), Expect = 1e-38 Identities = 136/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| ||||||| |||||||||||||||||| |||| ||| |||||||| | || || || Sbjct 3688 TCGCCGAGTCGGGTTGTTTGGGAATGCAGCCCTAAGCGGGCGGTAAATTCCGTCCAAGGC 3747 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| ||| |||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 3748 TAAATACGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 3807 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 3808 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 3852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079668812000