Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq389 87.8 2e-15 seq11215 86.0 7e-15 >seq389 Length=5342 Score = 87.8 bits (96), Expect = 2e-15 Identities = 121/166 (73%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| |||| ||| || |||| ||| || ||| || | | | |||| Sbjct 935 AAACCGACACAGGTAGGTAGGTAGAGAATACCTAGGGGCGCGAGACAA-CTCTCTCTAAG 993 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | ||| |||||||||||| || |||| || | || ||| || || Sbjct 994 GAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCACAAA--GGGGG 1051 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 || || || ||| || ||| |||||||| |||||||||||| || Sbjct 1052 TCGAAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 1097 >seq11215 Length=241 Score = 86.0 bits (94), Expect = 7e-15 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | || || ||||||| |||||||||| ||| || | ||| Sbjct 130 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 71 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| |||||| |||||| |||||||||||| || |||| Sbjct 70 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 31 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531120545760