Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq389 266 8e-69 seq1062 161 3e-37 seq11215 84.2 6e-14 >seq389 Length=5342 Score = 266 bits (294), Expect = 8e-69 Identities = 303/411 (74%), Gaps = 27/411 (7%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 1341 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 1282 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1281 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 1222 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 1221 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 1162 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 1161 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 1102 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| |||||||| Sbjct 1101 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTTCGACC------CC 1048 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| ||| | ||||||||||||||||||| || || Sbjct 1047 CTTTGTGAG-----------------GGGGCACCCCTTCTCCCGAAGTTACGGGGCTATT 1005 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 ||||| |||||||| ||||| |||| || ||| ||||||||||||| Sbjct 1004 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACC 954 >seq1062 Length=241 Score = 161 bits (178), Expect = 3e-37 Identities = 128/154 (83%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 86 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 145 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 146 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 205 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTT 160 | |||| ||||| |||||||||||| ||||||| Sbjct 206 CAGTTAGAGTTACTGCCGCCGTTTACTGGGGCTT 239 >seq11215 Length=241 Score = 84.2 bits (92), Expect = 6e-14 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 343 CCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCG 402 ||||||||||||||||||| | | ||||||| ||||||||| | ||||||||||||| Sbjct 34 CCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCG 93 Query 403 CCTTGGTATTCTCTAC 418 || | |||| |||||| Sbjct 94 CCCTAGTATACTCTAC 109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260605332480