Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq389 331 2e-88 seq1062 152 1e-34 seq11215 78.8 2e-12 >seq389 Length=5342 Score = 331 bits (366), Expect = 2e-88 Identities = 288/355 (81%), Gaps = 12/355 (3%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 1341 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 1282 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1281 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 1222 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||| | | | || | || Sbjct 1221 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 1162 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 1161 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 1102 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC-----TGT 297 || || ||||||||||||||||||||||||| |||||| || || || || ||| Sbjct 1101 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTTCGACCCCCTTTGT 1042 Query 298 CATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | | ||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 1041 GAGGG---GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 990 >seq1062 Length=241 Score = 152 bits (168), Expect = 1e-34 Identities = 126/154 (82%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 86 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 145 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 146 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 205 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 154 | |||| |||||| |||||||||||||||||||| Sbjct 206 CAGTTAGAGTTACTGCCGCCGTTTACTGGGGCTT 239 >seq11215 Length=241 Score = 78.8 bits (86), Expect = 2e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 307 GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 |||||||||||||| |||||||||||||||||||||||||||||| || |||||| Sbjct 29 GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTC 86 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062235965440