Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= AAMG01001188.1 Length=621 Score E Sequences producing significant alignments: (Bits) Value seq2447 181 4e-43 >seq2447 Length=236 Score = 181 bits (200), Expect = 4e-43 Identities = 175/225 (78%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 298 CCAGCGGATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCACTTCAGG 357 ||||||||| ||||||||||| | || ||||||||| ||||| |||| |||||| || || Sbjct 236 CCAGCGGATCGTGTTGATGTCGAGGTTGTTGGTCGGCTCGTCCAGCAGCAGCACGTCCGG 177 Query 358 ATCGGAAAACAGCGCCTGGGCCAGCAATACACGCAGCTTCCAGCCCGGGGACACTTCGCT 417 | || ||||||||||| ||||||| || ||||||||||| || || | || | ||| Sbjct 176 GTTCGAGAACAGCGCCTGCGCCAGCAGCACGCGCAGCTTCCACCCGGGCGCGACGTTGCT 117 Query 418 CATCGGACCGAAGTGCTGCTCCAGCGGAATACCCAGACCCAGCAGCAGCTCACCGGCACG 477 ||||| ||| |||||| || |||||| |||| |||| ||| || || || ||||| Sbjct 116 CATCGTGCCGTTGTGCTGGTCGGTCGGAATGCCCACGCCCATCAGGAGTTCGCCAGCACG 57 Query 478 GGATTCGGCGGTGTAGCCGTCCATCTCGGCGAACTCGGTTTCCAG 522 | |||||||||||||||||| |||||| ||| || ||||| Sbjct 56 CGCTTCGGCGGTGTAGCCGTCGTATTCGGCGTACTTGGCCTCCAG 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1881300402240