Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq14000 149 2e-33 seq389 116 1e-23 >seq14000 Length=18998 Score = 149 bits (164), Expect = 2e-33 Identities = 233/328 (71%), Gaps = 29/328 (9%) Strand=Plus/Minus Query 279 CATGGATAGATCACTTCGCTTCGGGTCT-TGATC-GTGCCACTCATACGCCCTATTCGGA 336 |||||||||||||| | |||||||| | | | ||| || | ||||||| || Sbjct 18997 CATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGACAATT----GCCCTATGAAGA 18942 Query 337 CTCGCTTTCGCTACGGCTACCCCACACGGGT----TAACCTCGCGACACAACGCAA-ACT 391 |||||||||||||||||| || || | ||||| || ||| | | | | Sbjct 18941 CTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAACCAAGC--CACTGCCTATGAGT 18887 Query 392 CGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCC 451 ||| |||||||||||||| |||||||| |||| | ||| || |||| Sbjct 18886 CGCCGGCTCATTCTTCAACAGGCACGCGGTCA----GAGCCTG---------TCTCCTCC 18840 Query 452 GACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCA 511 || | ||| || | ||||||| || ||||||||||||||| ||||| ||||||| Sbjct 18839 CACTGCTTGAGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATGGGGGTTCTTTTCA 18780 Query 512 CCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGT 571 || ||||||||||||||| | |||||||||||||| |||||||||||| ||| ||| Sbjct 18779 CCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGT 18720 Query 572 GGTCCCGCCAGATTCACACGAAATTTCA 599 ||||| | |||||||||| ||| || Sbjct 18719 GGTCCTTGCTGATTCACACGGGATTCCA 18692 >seq389 Length=5342 Score = 116 bits (128), Expect = 1e-23 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 139 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 80 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 79 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 20 Query 257 CTTACCCGCGCTTCAACCT 275 | |||| |||||| ||| Sbjct 19 TTCACCCAAGCTTCATCCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817319362560