Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq14000 178 3e-42 >seq14000 Length=18998 Score = 178 bits (196), Expect = 3e-42 Identities = 243/330 (74%), Gaps = 11/330 (3%) Strand=Plus/Minus Query 93 GGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCG 152 ||||||||| ||| | || |||||| || | || ||| | |||||| |||||||| Sbjct 18994 GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGTGACAATT-GCCCTATGAAGACTCG 18938 Query 153 CTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGAC 210 |||| ||||||| |||| | ||| |||| | ||||||| || |||||| | | Sbjct 18937 CTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA-GCCACTGCCTATGAGTCGCCGGC 18880 Query 211 CCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATA 270 |||| | ||| ||| |||| |||| | || ||||||||||||| || || Sbjct 18879 TCATTCTTCAACAGGCACGCGGTCAG---AGCCTGTCTCCTCCCACTGCTTGAGAGCTTA 18823 Query 271 CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTA 330 |||||||| | ||||||||||||||| | |||||||||||| || ||||||||||||| Sbjct 18822 CGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGTTCTTTTCACCCTTCCCTCACGGTA 18764 Query 331 CTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCA 390 ||| ||| |||||||||| ||| |||||||||||||| | | |||||| | ||||| Sbjct 18763 CTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCA 18704 Query 391 GACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 || || | ||||| || | ||||||| Sbjct 18703 CACGGGATTCCACGTGCCCCATGCTACTCG 18674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241408296960