Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2 316 4e-84 >seq2 Length=6919 Score = 316 bits (350), Expect = 4e-84 Identities = 262/314 (83%), Gaps = 8/314 (3%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC-GCTTTGGCGGGTCGCCG---GCTTC 75 || |||||||| | |||||||| |||| | || | | || | |||| | ||||| Sbjct 2316 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTATGCCT--TCGCAGCTAGCTTC 2373 Query 76 TTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGC 134 ||||||||||||| | || | || | | |||||||||||||||||||||||||||||||| Sbjct 2374 TTAGAGGGACTATGGCCTTCCAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGTGATGC 2433 Query 135 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTT 194 |||||||||||||||||||||||||||||||||||| | |||||||| || |||| Sbjct 2434 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTT 2493 Query 195 GGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAAT 254 ||||| ||||| |||||||||| | ||| | ||||| |||||||||| ||||||||| Sbjct 2494 GGCCGACAGGTCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAAT 2552 Query 255 TATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGT 314 | ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| ||||| Sbjct 2553 TGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGT 2612 Query 315 CCCTGCCCTTTGTA 328 |||||||||||||| Sbjct 2613 CCCTGCCCTTTGTA 2626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947053752320