Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq389 149 2e-33 >seq389 Length=5342 Score = 149 bits (164), Expect = 2e-33 Identities = 349/519 (67%), Gaps = 36/519 (7%) Strand=Plus/Plus Query 65 AGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGG 124 ||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| || Sbjct 1 AGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGC 60 Query 125 GGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCG 184 ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| ||| Sbjct 61 GGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCG 120 Query 185 AAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATCG-GGGGTAGAGCACTGTTATG 239 ||| || ||| || ||| | || |||| |||||| ||||||||| | Sbjct 121 AAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTTTCG 175 Query 240 GCTAGGGGGTC-ATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGC---ATCAGTT 295 | ||| | | ||| ||||||| | |||||||| |||| | || | | Sbjct 176 GTGCGGGCCGCGAGAGCGG--TACCAAATCGAGGCAAACTCTGAATACTAGATATGACCT 233 Query 296 T----TACCGCGGG------------AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAG 339 || | ||| |||||| ||||| | |||| | | | |||| Sbjct 234 CCAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAG 293 Query 340 AGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGA 399 ||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | || || Sbjct 294 AGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAGGA 351 Query 400 AGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTG 459 || | ||| ||||||| |||| ||| || | |||||||||| | || |||||||| Sbjct 352 GGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGAGTG 410 Query 460 CGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTA 519 ||||| |||||||| ||||| || ||| || || | |||| |||| ||| Sbjct 411 CGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGATCTG 469 Query 520 CCGAAGCAGTGGGATCATTTATATGATCGGTAGGGGAGC 558 ||||||| ||||||| | | |||||||||||||| Sbjct 470 CCGAAGCTGTGGGATGTAAAAAAACATCGGTAGGGGAGC 508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689339125760