Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq391 663 0.0 seq582 563 1e-155 >seq391 Length=7892 Score = 663 bits (734), Expect = 0.0 Identities = 725/961 (75%), Gaps = 2/961 (0%) Strand=Plus/Plus Query 159830 AACCGCCTCTATGTCGGTTGGTTCGGCGTCCTGATGATCCCAACTCTGTTGGCAGCAACT 159889 ||||| || || |||| ||||| || || |||||||||| || | ||| | |||||| Sbjct 6621 AACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACT 6680 Query 159890 ATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGA 159948 |||| || || | |||||||| |||||||| || || || || ||||| || ||||| Sbjct 6681 -TCTGTATTTATTATAGCCTTCATAGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 6739 Query 159949 ACCCGTCGCTGGTTCACTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTC 160008 ||| || |||| || || | ||||| ||||| || || || ||||| || |||| | Sbjct 6740 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCGGGTGCTATTATTCCTAC 6799 Query 160009 TTCCAACGCAATTGGTCTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTG 160068 ||| || ||||| | ||||| || || || |||||||| ||||| | || ||||| Sbjct 6800 TTCTGCAGCTATTGGGTTGCACTTTTACCCAATCTGGGAAGCGGCATCAGTTGATGAGTG 6859 Query 160069 GCTCTATAACGGTGGTCCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGC 160128 | | || || |||||||||| |||| | || | |||||| | | || | | Sbjct 6860 GTTATACAATGGTGGTCCTTATGAACTAATCGTTCTACACTTCTTACTTGGTGTAGCTTG 6919 Query 160129 CTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGT 160188 ||||||||||||||||||||||| || |||||| ||||||||||| ||||| ||| Sbjct 6920 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 6979 Query 160189 TGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCA 160248 |||||| || ||||| || || || ||| ||||||| ||| | ||||||| ||||||| Sbjct 6980 TGCATATTCAGCTCCGGTTGCAGCGGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCA 7039 Query 160249 GGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGT 160308 || || || |||| ||||||||| || |||||||||||||| |||| |||| | || Sbjct 7040 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATCGT 7099 Query 160309 ATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGT 160368 |||||| || || ||||| ||||||||||| || || |||||| | ||||| ||||| || Sbjct 7100 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 7159 Query 160369 ATTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAG 160428 |||||| || || || || |||||||||||| || |||| ||||||||| | |||| Sbjct 7160 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAG 7219 Query 160429 AGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGAC 160488 || || ||||||| ||| || ||| | ||||||| ||||||||||||||||| || Sbjct 7220 GGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 7279 Query 160489 TTACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTT 160548 ||| |||||||| || || ||||| || || ||||| ||||||||||||||||| || Sbjct 7280 TTATAACATCGTAGCTGCTCATGGTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTT 7339 Query 160549 TAACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTT 160608 |||||||| || ||| | ||||||||| | |||||||||||||| | || || ||||| Sbjct 7340 CAACAACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAATCGGTATTTGGTT 7399 Query 160609 CACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTC 160668 ||||| | ||| || ||| ||||| ||||| || || ||||||||||||||||| || Sbjct 7400 TACTGCTTTGGGTATTAGTACTATGGCTTTCAACCTAAACGGTTTCAACTTCAACCAATC 7459 Query 160669 CATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGG 160728 | | || | ||||| | || | ||||| ||||| || | ||||||| ||| Sbjct 7460 TGTAGTTGATAGTCAAGGTCGTGTAATTAACACCTGGGCTGATATCATTAACCGTGCTAA 7519 Query 160729 TCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAACTTCCCTCTCGACCTTGCTGC 160788 || || |||||||| ||||| || ||||| ||||| ||||||||||| ||| | ||||| Sbjct 7520 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACTTAGCTGC 7579 Query 160789 T 160789 | Sbjct 7580 T 7580 >seq582 Length=29683 Score = 563 bits (624), Expect = 1e-155 Identities = 728/995 (73%), Gaps = 9/995 (1%) Strand=Plus/Plus Query 161545 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 161604 || |||||||||||||| || |||||||| || | || ||||| ||||||| | || Sbjct 24975 GACCGTTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCTTATTTCGCC 25034 Query 161605 ATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCT 161664 | || |||||| |||| || || || || | || ||||||||||||||| | || Sbjct 25035 TTAGGAGGTTGGTTTACGGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTGGCC 25094 Query 161665 AGTTCCTATCTTGAGGG-TGCAAATTTTCTTA-CAGCGGCAGTTAGCACTCCAGCTGACG 161722 ||||| ||| | || || ||||| ||||||| | || || ||| ||||| ||| | Sbjct 25095 AGTTCTTATTTGGAAGGCTGCAA--TTTCTTAACCGCAGCGGTTTCTACTCCTGCTAATA 25152 Query 161723 CTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGG 161781 | | | || ||| || || || || ||||||||||| || ||||||||||| | Sbjct 25153 GTTTAGCACACTCT-TTATTGTTACTATGGGGTCCTGAAGCACAAGGGGATTTTACTCGT 25211 Query 161782 TGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATT 161841 ||| ||| | || || || |||| ||| || || || || || |||||||| || || Sbjct 25212 TGGTGTCAATTAGGCGGCCTGTGGACTTTCGTTGCTCTTCATGGTGCTTTCGCACTAATA 25271 Query 161842 GGATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGC 161900 || || ||| | |||||||| ||||||||||| ||| || | | || ||||| ||||| Sbjct 25272 GGTTTTATGTTACGTCAGTTCGAACTTGCTCGATCTGTTCAAT-TGCGCCCTTATAATGC 25330 Query 161901 TATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGG 161960 || || ||||||||||| |||||||||||||| || || || || ||||| | || Sbjct 25331 AATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTAATTTATCCATTAGG 25390 Query 161961 ACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACT 162020 ||||| ||||| || || || ||||| || || ||||| || || ||| | || Sbjct 25391 TCAGTCTGGTTGGTTTTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTAGATTCATTCT 25450 Query 162021 TTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGG 162080 || | ||||| || || || |||||||| || || || || |||||||| || || || Sbjct 25451 ATTTTTTCAAGGGTTTCATAACTGGACGCTGAACCCATTTCATATGATGGGAGTTGCCGG 25510 Query 162081 TATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTA 162140 | | ||||| | |||| |||| | |||||||| |||| ||||| ||||| || | | Sbjct 25511 TGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATT 25570 Query 162141 CCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGAC 162200 | |||||||| |||||||| ||| ||||||| || | || |||| || || || Sbjct 25571 TGAGGATGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAACTCAAGCTGAAGAAAC 25630 Query 162201 TTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAA 162260 ||| || |||||||| || ||||| || ||||| || ||||| || |||||||| || Sbjct 25631 TTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAA 25690 Query 162261 TAAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTC 162320 ||| |||||||| |||||||||||| | || || || || | ||| | |||| ||| | Sbjct 25691 TAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGC 25750 Query 162321 TATCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGAT 162380 | | || | | || || || | || || ||||| || ||||| || || ||||| || Sbjct 25751 TCTTGGGGTAGTCGGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAAT 25810 Query 162381 TCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGA 162440 |||||||| || ||||||||||||||||| ||||||||||| ||||| ||||| || || Sbjct 25811 CCGTGCAGCTGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGA 25870 Query 162441 AGGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGA 162500 |||| ||||||| ||| |||| | ||||| || ||||| ||| || |||||||||| Sbjct 25871 AGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGA 25930 Query 162501 GGAAGTTCTGCCTAGAGGTAACGCACTGTGAATGG 162535 ||| ||||| || | || ||||| || | ||||| Sbjct 25931 GGAGGTTCTACCCCGTGGAAACGCTCT-TTAATGG 25964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551269584432000