Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq391 702 0.0 seq582 526 2e-144 >seq391 Length=7892 Score = 702 bits (778), Expect = 0.0 Identities = 736/962 (77%), Gaps = 4/962 (0%) Strand=Plus/Plus Query 160599 AATCGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACC 160658 || ||||||||| |||| ||||| ||||| |||||||||| || | ||| | ||||| Sbjct 6621 AACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACT 6680 Query 160659 GTCTGC-TTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGA 160717 |||| ||||||| || ||| | |||||||| || || || || || ||||| ||||| Sbjct 6681 -TCTGTATTTATTATAGCCTTCATAGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 6739 Query 160718 ACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTC 160777 ||| ||| |||| || || | || |||||||| || || || ||||| || ||||| | Sbjct 6740 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCGGGTGCTATTATTCCTAC 6799 Query 160778 TTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATG 160837 ||| || ||||| | ||||| ||||| || |||||||| ||||| ||||||| || Sbjct 6800 TTCTGCAGCTATTGGGTTGCACTTTTACCCAATCTGGGAAGCGGCATCAGTTGATGAGTG 6859 Query 160838 GCTCTACAATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTG 160897 | | ||||||||||||||||| |||| |||| | |||||| | | || | || Sbjct 6860 GTTATACAATGGTGGTCCTTATGAACTAATCGTTCTACACTTCTTACTTGGTGTAGCTTG 6919 Query 160898 CTACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC-G 160956 || |||||||| |||||||||||| | ||| || || ||||| || ||||| ||| | Sbjct 6920 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTG 6978 Query 160957 TTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTC 161016 |||||||||| || || ||||| || || | ||| || ||| | |||| || |||||| Sbjct 6979 TTGCATATTCAGCTCCGGTTGCAGCGGCTACTGCTGTTTTCTTGATCTACCCAATCGGTC 7038 Query 161017 AAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTG 161076 |||| || |||||||||||||| || || ||||||||||| |||||||| ||| | | Sbjct 7039 AAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATCG 7098 Query 161077 TCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTG 161136 | |||||||| || ||||||||||| |||||||| || |||||||| ||||| ||||||| Sbjct 7099 TATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 7158 Query 161137 TCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTC 161196 | ||||| || || || || || ||||||||||| |||| |||||| || | Sbjct 7159 TATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCA 7218 Query 161197 GTGAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGA 161256 | |||||||| || || || || ||| | ||||||| || |||||||| ||||| | Sbjct 7219 GGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAA 7278 Query 161257 CCTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCT 161316 | || |||||||| |||||||||||||| || ||||| ||||||||||||| ||| | Sbjct 7279 CTTATAACATCGTAGCTGCTCATGGTTATTTTGGTCGATTGATCTTCCAATATGCTAGTT 7338 Query 161317 TCAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGT 161376 |||||||||| ||||| || ||||||||| | || || |||||||| ||||||| |||| Sbjct 7339 TCAACAACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAATCGGTATTTGGT 7398 Query 161377 TCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGT 161436 | ||||| | ||| | || ||||| |||||||| ||||| |||||||||||||| | Sbjct 7399 TTACTGCTTTGGGTATTAGTACTATGGCTTTCAACCTAAACGGTTTCAACTTCAACCAAT 7458 Query 161437 CCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTA 161496 | | | ||| |||| || || | |||||||||||||| | | || ||||||| Sbjct 7459 CTGTAGTTGATAGTCAAGGTCGTGTAATTAACACCTGGGCTGATATCATTAACCGTGCTA 7518 Query 161497 ACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTCGCTG 161556 |||||||||||||||| ||||| || ||||||||||| ||||||||||| || | |||| Sbjct 7519 ACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACTTAGCTG 7578 Query 161557 CT 161558 || Sbjct 7579 CT 7580 >seq582 Length=29683 Score = 526 bits (582), Expect = 2e-144 Identities = 711/988 (72%), Gaps = 2/988 (0%) Strand=Plus/Plus Query 163917 GATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTTGCA 163976 || || || || ||||| ||||||||||| || | || ||||| ||||||| | || Sbjct 24975 GACCGTTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCTTATTTCGCC 25034 Query 163977 ATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTCGCG 164036 | || || ||| |||| |||||||| ||||| || ||||| ||||| || | || Sbjct 25035 TTAGGAGGTTGGTTTACGGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTGGCC 25094 Query 164037 TCTAGTTACCTTGAGGG-TGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGC 164095 | ||| | || || ||| |||||| | || || || || || || |||||| || Sbjct 25095 AGTTCTTATTTGGAAGGCTGC-AATTTCTTAACCGCAGCGGTTTCTACTCCTGCTAATAG 25153 Query 164096 TATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAGGTG 164155 | | | || ||| | | |||| ||||||||||| | || ||||| || | | | || Sbjct 25154 TTTAGCACACTCTTTATTGTTACTATGGGGTCCTGAAGCACAAGGGGATTTTACTCGTTG 25213 Query 164156 GTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGATCGG 164215 ||| ||| | || || || ||| |||| || || | || || ||||||| || || || Sbjct 25214 GTGTCAATTAGGCGGCCTGTGGACTTTCGTTGCTCTTCATGGTGCTTTCGCACTAATAGG 25273 Query 164216 TTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGCTAT 164275 ||| ||| | || ||||| ||| |||| || ||| | || || || ||||| || Sbjct 25274 TTTTATGTTACGTCAGTTCGAACTTGCTCGATCTGTTCAATTGCGCCCTTATAATGCAAT 25333 Query 164276 TGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGGCA 164335 || ||||||||||| |||||||| ||||| || ||||| || || || | || || Sbjct 25334 CGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTAATTTATCCATTAGGTCA 25393 Query 164336 ATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTGTT 164395 ||| ||||||| ||||| || ||||| || || || || || |||||| | | || Sbjct 25394 GTCTGGTTGGTTTTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTAGATTCATTCTATT 25453 Query 164396 CCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGCAT 164455 | ||||| || ||||||||||| || ||||| || ||||||||||| ||||| || | Sbjct 25454 TTTTCAAGGGTTTCATAACTGGACGCTGAACCCATTTCATATGATGGGAGTTGCCGGTGT 25513 Query 164456 CCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGA 164515 | || | |||||| || || ||||||||||||||||| ||||| |||||||| ||||| Sbjct 25514 ATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGA 25573 Query 164516 AGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTA 164575 |||||||| ||||||| ||| ||| || | || ||||||| ||||| ||||| Sbjct 25574 GGATGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAACTCAAGCTGAAGAAACTTA 25633 Query 164576 CTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAA 164635 || ||||| || || |||||||| ||||| || || ||||| ||||||| |||||| Sbjct 25634 TTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAA 25693 Query 164636 GCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTAT 164695 |||||||| || ||||||||| | ||||| || || | || | |||| ||| || | Sbjct 25694 ACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCT 25753 Query 164696 TGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAG 164755 ||| | ||||||| || | || || ||||| ||||| || || || ||||| || | Sbjct 25754 TGGGGTAGTCGGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCG 25813 Query 164756 AGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAAGG 164815 ||||| || |||||||||||||| || ||||| || || || || ||| | || ||||| Sbjct 25814 TGCAGCTGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAAGG 25873 Query 164816 ACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAATCGTTTGTATTTCCAGAGGA 164875 | ||||| |||||||| | ||| ||||| || ||| || |||| || ||||| Sbjct 25874 TATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGA 25933 Query 164876 AGTTCTTCCGAGAGGTAACGCACTCTAA 164903 ||||| || | || ||||| || ||| Sbjct 25934 GGTTCTACCCCGTGGAAACGCTCTTTAA 25961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559220049696000