Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq9597 212 2e-52 seq3634 118 3e-24 >seq9597 Length=11437 Score = 212 bits (234), Expect = 2e-52 Identities = 293/409 (72%), Gaps = 2/409 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| ||||||||||||||||||| ||| ||| ||| Sbjct 4619 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACGGAGGATGC 4678 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | |||| | | || Sbjct 4679 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 4738 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||| | || |||| | || Sbjct 4739 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTCCGGTAGG 4798 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| ||||||||||| || || | | ||||||||| || Sbjct 4799 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTTGAGATCGGAAAGAACACCAAGGG 4858 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| || | ||||| |||||||| || | |||||||| ||||||| || | Sbjct 4859 CGAAAGCGCTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGG 4918 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 ||||||| |||| ||||||| ||| |||||||| ||||| | || | | | Sbjct 4919 GATTAGAGACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 4978 Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || || | ||||||||||| |||| ||||||||||| ||| Sbjct 4979 CCCGTGCAGTGCTGGAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 5027 >seq3634 Length=53635 Score = 118 bits (130), Expect = 3e-24 Identities = 228/333 (68%), Gaps = 15/333 (5%) Strand=Plus/Plus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||| |||| | |||||||| |||||||| |||| |||||| || ||| ||||| ||| Sbjct 30805 GAAGAAGCCCTGGCTAACTCCGTGCCAGTAGCCACGGTAAAACCGGGGG-GCAAGTGTTT 30863 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGT-----GTGAA 125 ||||||| ||| ||| ||||| | || ||| ||| | ||||| ||||| Sbjct 30864 TTCGGAATGACTAGGCATAAAGGGCACGTAGGTGGTG-----AATCAGGTTGAAAGTGAA 30918 Query 126 ATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGG 184 | | | | || |||| ||| ||| ||| || ||| | || | ||||| Sbjct 30919 AGTCAC---CAAAAACTGGCGAAATGCTCTTGAAACCAATTCACTTGTGTAAGACAGAGA 30975 Query 185 GGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCG 244 | |||||||| | ||| || ||||||| | |||| | | |||||| |||| | | Sbjct 30976 AGAGTGGAATTTCGTGTGGAGGGGTGAAATCCAAAGATCTAAGAAGGAACGCCAAAAGTG 31035 Query 245 AAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGA 304 | |||||| | |||| || | ||| | |||||| |||| ||||||| ||| Sbjct 31036 ATGGCAGCTCTTTGGGTCTCTACCAATGCTGGGGTGTGAAAGCATGGGTAGCAAACGGGA 31095 Query 305 TTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||||||||||||||| ||| |||| ||| Sbjct 31096 TTAGATACCCTGGTAGTCCATGCCGTAAATGAT 31128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289241890976