Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq9597 141 1e-31 seq3590 136 5e-30 seq10839 134 2e-29 seq912 73.4 5e-11 >seq9597 Length=11437 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 8327 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 8269 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 8268 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 8222 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 8221 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 8168 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 8167 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 8108 Query 246 GTA 248 ||| Sbjct 8107 GTA 8105 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 10512 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 10454 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 10453 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 10407 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 10406 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 10353 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 10352 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 10293 Query 246 GTA 248 ||| Sbjct 10292 GTA 10290 >seq3590 Length=62634 Score = 136 bits (150), Expect = 5e-30 Identities = 177/241 (73%), Gaps = 13/241 (5%) Strand=Plus/Plus Query 8 TTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTG 67 ||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | | || Sbjct 1100 TTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCTTG 1158 Query 68 TGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTC 127 |||||||| |||||||||||| ||| || | | ||| || | | |||| | | Sbjct 1159 TGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCACTTTCCTAA--TCAAAAGAT- 1215 Query 128 GTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187 || || | |||||||||||| |||||||||||| ||||||||||| |||||| Sbjct 1216 -------AGGAGAG-CACCCCTTCTCCGGAAGTTACGGGGTCATTTTGCCGAGTTCCTTC 1267 Query 188 ACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGT 247 || |||| | | | |||| |||||| |||||| || ||||||||||| ||| ||| Sbjct 1268 GACATTGTTCTCTCAAGCGCC-TAGTATACTCTACTTGTTCACCTGTGTCGATTTGGGGT 1326 Query 248 A 248 | Sbjct 1327 A 1327 >seq10839 Length=6436 Score = 134 bits (148), Expect = 2e-29 Identities = 176/241 (73%), Gaps = 12/241 (5%) Strand=Plus/Plus Query 8 TTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTG 67 ||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | |||| Sbjct 4346 TTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCCTG 4404 Query 68 TGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTC 127 |||||||| |||||||||||| ||| || | | ||| | | | |||| | | Sbjct 4405 TGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGAT- 4461 Query 128 GTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187 || | | |||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 4462 -------AGGA-TAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTC 4513 Query 188 ACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGT 247 || |||| | | | ||| ||||| |||||| || |||| |||||||||| ||| Sbjct 4514 GACATGGTTCTCTCAAGTGCCCCAGTATACTCTACTTGTTCACCCGTGTCGGTTTGGGGT 4573 Query 248 A 248 | Sbjct 4574 A 4574 >seq912 Length=151694 Score = 73.4 bits (80), Expect = 5e-11 Identities = 81/108 (75%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||| || |||||| |||||||| |||| |||||| ||| || |||| | |||| | Sbjct 18427 GGCATCCTTTCTCCTGAAGTTACAGGGCTATTTTGTCGAGTTTTTTAAAGAGAGTTGTCT 18486 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | ||| || |||||||||| ||||||||||| |||| |||| Sbjct 18487 CACGCCCCTAGGTGTTCTCTACCTACCCACCTGTGTCAGTTTCAGGTA 18534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694213197937