Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq9597 217 3e-54 seq3634 132 1e-28 seq1811 87.8 4e-15 seq1517 78.8 2e-12 >seq9597 Length=11437 Score = 217 bits (240), Expect = 3e-54 Identities = 151/170 (89%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 4562 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 4504 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 4503 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 4444 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 4443 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 4394 >seq3634 Length=53635 Score = 132 bits (146), Expect = 1e-28 Identities = 158/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| | | | |||| || |||| |||||||| Sbjct 30767 CTTTACAAGCGGCATTGCCCTTCTT-CACTTATGAGATATTG-CTAGATCGGGCTTTCGT 30710 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||| |||| | ||| | ||||||| |||||||||||| || Sbjct 30709 CCATTGTCCAAGATTCCCCATGGCTGTCCCCCATGGGAGTCTAAGCCGTGTCTCAGTCCC 30650 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| ||||||||| ||| || | | ||| | |||||| ||| |||||| Sbjct 30649 AGTGTGGTTGATCATCCAAAACGACTAGCCAAGCATCACTGGCTTGGTTAGCTTTTACCT 30590 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATC 209 |||||||| ||||| | || ||||||||| Sbjct 30589 GACCAACTACCTAATACTACACAGGCTCATC 30559 >seq1811 Length=91737 Score = 87.8 bits (96), Expect = 4e-15 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 53 TTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTC 112 ||| ||||| || || |||| | |||||| ||||| |||||| ||||| |||| ||| Sbjct 6503 TTTTGCCCACCGTAGAAAATTCTCAACTGCTACCTCCTGTAGGATTCTGGGTCGTGCCTC 6444 Query 113 AGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCA 172 || | |||| | || |||||||||||| || || ||| ||| || ||| | || | Sbjct 6443 TGTCCTAGTGAGGCTAATCATCCTCTCAAACTAGCTACTAATCATCCACTTAATAAGTTA 6384 Query 173 TTACCTCACCAACTAGCTAAT 193 || ||| | ||||||| |||| Sbjct 6383 TTGCCTTAACAACTAGGTAAT 6363 >seq1517 Length=108292 Score = 78.8 bits (86), Expect = 2e-12 Identities = 59/68 (87%), Gaps = 1/68 (1%) Strand=Plus/Minus Query 32 GCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCG 91 || |||||| || ||||||||||||||||||| || ||||||||||||||||||||| Sbjct 30043 GCAGCATTG-CTCCGTCAGGCTTTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTCCCG 29985 Query 92 TAGGAGTC 99 | |||||| Sbjct 29984 TGGGAGTC 29977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071702316320