Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq9597 241 5e-61 seq3590 150 7e-34 seq9851 132 2e-28 seq10839 129 2e-27 seq4338 105 2e-20 >seq9597 Length=11437 Score = 241 bits (266), Expect = 5e-61 Identities = 326/447 (73%), Gaps = 27/447 (6%) Strand=Plus/Minus Query 160 GAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTC 219 |||||||||||| | | ||| || |||| ||||||||||| ||||| |||||| || Sbjct 7603 GAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCTG 7544 Query 220 AGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCC 279 | | |||||| | ||| ||||||| ||||||| || | |||| |||||| |||| | Sbjct 7543 ATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTTTCACCCAAGCTTCATCCTGGTC 7484 Query 280 ATGGATAGATCACTTCGCTTCGGGTCT-TGATC-GTGCCACTCATACGCCCTATTCGGAC 337 ||||||||||||| | |||||||| | | | ||| || | ||||||| ||| Sbjct 7483 ATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGACAATT----GCCCTATGAAGAC 7428 Query 338 TCGCTTTCGCTACGGCTACCCCACACGGGT----TAACCTCGCGACACAACGCAA-ACTC 392 ||||||||||||||||| || || | ||||| || ||| | | | || Sbjct 7427 TCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAACCAAGC--CACTGCCTATGAGTC 7373 Query 393 GCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCG 452 || |||||||||||||| |||||||| |||| | ||| ||| | |||| Sbjct 7372 GCCGGCTCATTCTTCAACAGGCACGCGGTCA---GAGCCCTG---GGCTC-----CTCCC 7324 Query 453 ACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCAC 512 || | ||| || | ||||||| || ||||||||||||||| | ||||| |||||||| Sbjct 7323 ACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGACGGGGGTTCTTTTCAC 7264 Query 513 CTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTG 572 | ||||||||||||||| | |||||||||||||| |||||||||||| ||| |||| Sbjct 7263 CCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTG 7204 Query 573 GTCCCGCCAGATTCACACGAAATTTCA 599 |||| | |||||||||| ||| || Sbjct 7203 GTCCTTGCTGATTCACACGGGATTCCA 7177 >seq3590 Length=62634 Score = 150 bits (166), Expect = 7e-34 Identities = 353/520 (68%), Gaps = 42/520 (8%) Strand=Plus/Plus Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146 ||||| |||||| |||| ||||||||||||| || | ||| ||||| || | Sbjct 2439 GGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGA 2498 Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 ||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| |||| Sbjct 2499 AATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCAC 2558 Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGC 265 | ||||||||| | ||| | || || ||||||||||||||||| | | ||| | | Sbjct 2559 AAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTC 2618 Query 266 GCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACG 325 ||||||||||| ||||| |||||| | | |||||||| || | | | | | Sbjct 2619 TCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC-AAATAGGAAGAACTAGAAG 2677 Query 326 CCCTATTCGGACTCGCTTTCGCTA-CGGCTACCCCACACGGGTTAA-CCTCGCGACACAA 383 |||| || || | | | || |||| || | || |||| || | | || Sbjct 2678 ----ATTC-AAC---CTCTGGAAAGCGCCTACACCTAATGGCTTAAGCCGCTGTTCCCAT 2729 Query 384 CGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA-CCTG-GTAC------CTA- 434 | ||||| | | ||| | ||||||| ||||||| | || || | ||| Sbjct 2730 TTC---CTCGCTGACCCATCATGCAAAAGGTACGCCGTTAGAGTGAGTGCGCTTGACTAA 2786 Query 435 --------AAAGGC----ACTTCAGCTC---CGACGGATTGTAGGCACATGGTTTCAGGT 479 |||||| | ||| ||| |||| |||||| ||| | | |||||| Sbjct 2787 TCTAAAGTAAAGGCTCTAAGTTCCACTCCTTCGACTGATTGTTCGCATCGGATCTCAGGT 2846 Query 480 --ACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCT 537 ||||||||||||| |||| |||||||||||||||||||||||||||| |||| Sbjct 2847 TCTCTATTTCACTCCCTAAATAGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCT 2906 Query 538 ATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCC 577 |||||||| |||| || ||| ||||| ||||||||| Sbjct 2907 ATCGGTCATTGAGGAATACTTAAGCTTAGATGGTGGTCCC 2946 >seq9851 Length=9393 Score = 132 bits (146), Expect = 2e-28 Identities = 163/220 (74%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||||||| ||||||||||||||| ||| ||||| | | |||||| |||| |||||| Sbjct 3919 GCTGCACCTCAATGCATTTCGGGGAAAACTAGCTAGCTCTGGGTTTGAGTGGCATTTCAC 3978 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| |||| |||||| | | | |||||| | ||| ||||||| ||||||| || Sbjct 3979 CCCTAATCACAACTCATCCGTTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 4038 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| ||||| | || |||||||||||||| | || |||| | | | | ||| Sbjct 4039 TTCACCCAAACTTCATCTTGGTCATGGATAGATCACCCAGGTTTGGGTCCATAAGCAGTG 4098 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCT 354 || | ||||||| ||||||||||| |||| ||| Sbjct 4099 ACAAT----TGCCCTATGAAGACTCGCTTTCACTACAGCT 4134 >seq10839 Length=6436 Score = 129 bits (142), Expect = 2e-27 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146 ||||| |||||| |||| ||||||||||||| || | |||| ||||| || | Sbjct 5673 GGGCCACCCTAGCCCATTAAGTGCTCTACCTCGGGCCATCAACATCATACGCTCTACTGA 5732 Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 ||| ||||| ||| |||||||||| | | ||| ||||||||||| ||||| |||| Sbjct 5733 AATAGATTTCACGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCATCCCTAGCCAC 5792 Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGC 265 | ||||||||| | ||| | || || ||||||||||||||||| | | ||| | | Sbjct 5793 AAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTC 5852 Query 266 GCTTCAACCTGCCCATGGATAGATC 290 ||| ||||||| ||||| |||||| Sbjct 5853 TCTTTAACCTGCTCATGGCTAGATC 5877 Score = 95.1 bits (104), Expect = 4e-17 Identities = 100/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTAC 505 || |||| |||||| ||| | | ||| || || ||||| ||||| |||| | Sbjct 6049 CTTCGACTGATTGTTCGCATCGGATCTCAAGTTCTCTATTTCGCTCCCTAAATAGGGTTC 6108 Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 ||||||||||||||||||||||||||| |||||||||||| |||| || ||||||||| Sbjct 6109 TTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTA 6168 Query 566 ACGGGTGGTCC 576 | |||||| Sbjct 6169 GAGAATGGTCC 6179 >seq4338 Length=41625 Score = 105 bits (116), Expect = 2e-20 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 || |||||| || |||||||||||| ||||||||| | ||| || || | |||||| Sbjct 38573 GCCGCACCTCAACGCATTTCGGGGAAAACCAGCTAGCTTTGGGTTCGAGTGACATTTCAC 38514 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||| | ||||| || | | |||||| | ||| ||||||| |||||| || Sbjct 38513 CCCTAACCATAACTCATCTGCTGATTCTTCAACATTAGTCGGTTCGGACCTCCATTTAGT 38454 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCAC 292 | |||| |||||| | || |||||||||||||| Sbjct 38453 TTCACCCAAGCTTCATCTTGGTCATGGATAGATCAC 38418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817095270656