Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq9597 223 9e-56 seq3590 98.7 2e-18 seq10839 93.3 1e-16 seq9851 86.0 2e-14 seq4338 77.0 8e-12 >seq9597 Length=11437 Score = 223 bits (246), Expect = 9e-56 Identities = 311/420 (74%), Gaps = 26/420 (6%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 7560 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 7504 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 7503 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 7448 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 7447 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 7390 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAA 243 ||||||| || |||||| | | |||| | ||| ||| |||| |||| ||| Sbjct 7389 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGCCC----- 7336 Query 244 AGTGGGCTCC---CACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTC 300 |||||||| ||||||||| || |||||||||| | ||||||||||||||| | Sbjct 7335 --TGGGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGA-C 7279 Query 301 CGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATT 360 |||||||||||| || |||||||||||||||| ||| |||||||||| ||| |||||| Sbjct 7278 GGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATT 7219 Query 361 TAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||| | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 7218 TAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 7159 >seq3590 Length=62634 Score = 98.7 bits (108), Expect = 2e-18 Identities = 101/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||||||||||| | |||||||||| Sbjct 2820 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTTCACTCCC-TAAATAGGGTTCTTTT 2878 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || ||| ||| || | Sbjct 2879 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAAGCTTAGATG 2938 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 2939 GTGGTCCCCC 2948 >seq10839 Length=6436 Score = 93.3 bits (102), Expect = 1e-16 Identities = 98/127 (77%), Gaps = 3/127 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||| | ||| ||||| ||||| | |||||||||| Sbjct 6054 ACTGATTGTTCGCATCGGATCTCAAGTTCTCTATTTCGCTCCC-TAAATAGGGTTCTTTT 6112 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| ||| Sbjct 6113 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGA 6172 Query 373 ATGGTCC 379 ||||||| Sbjct 6173 ATGGTCC 6179 >seq9851 Length=9393 Score = 86.0 bits (94), Expect = 2e-14 Identities = 188/269 (70%), Gaps = 17/269 (6%) Strand=Plus/Plus Query 29 TTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCC 88 || |||||| ||||||||||| |||||| ||||| | |||||| | |||| | || Sbjct 4003 TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT-TTCACCCAAAC-TTCATCTTGGT 4060 Query 89 CATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGA 148 ||| ||||||||| ||| | ||| ||||| | | ||| ||| | |||||| |||| Sbjct 4061 CAT-GGATAGATCACCCAGGTTT-GGGTCCA-TAAGCAGTGAC-AATTGCCCTATGAAGA 4116 Query 149 CTCGCTTTTCGCTACGCCTCCCCT--ATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGC 206 ||||| |||| |||| |||| | ||| |||| | ||||||| || ||| || Sbjct 4117 CTCGC-TTTCACTACAGCTCCGGTGGGTTCCTTTAA-CCAAGCCACTGCCTATGAGTTGC 4174 Query 207 TGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAAAGTGGGCTCCCACTGCTTGT 263 | | |||| | ||| | | |||| |||| ||| ||| ||||||||||||| Sbjct 4175 CGGCTCATTCTTCAACACGCACGCGGTCAGAGCCC----AAGGCTCCTCCCACTGCTTGG 4230 Query 264 ACGCATACGGTTTCAGGATCTATTTCACT 292 | |||||||||| ||||||| ||| Sbjct 4231 GAACTTACGGTTTCATATTCTATTTTACT 4259 >seq4338 Length=41625 Score = 77.0 bits (84), Expect = 8e-12 Identities = 187/273 (68%), Gaps = 23/273 (8%) Strand=Plus/Minus Query 29 TTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCC 88 || |||||| |||||||||||| |||||| ||||| | |||||| | |||| | || Sbjct 38489 TTCTTCAACATTAGTCGGTTCGGACCTCCATTTAGT-TTCACCCAAGC-TTCATCTTGGT 38432 Query 89 CATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGA 148 ||| ||||||||| ||| ||| || || | ||| ||| | | |||| |||| Sbjct 38431 CAT-GGATAGATCACCCAAGTTTAGGTTC--ATAAGCAGTGAC-AATTGTCCTATGAAGA 38376 Query 149 CTCGCTTTTCGCTACGCCTCCCCT--ATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGC 206 ||| ||||| |||||| |||| | ||| |||| | ||||||| || |||||| Sbjct 38375 CTCACTTTT-GCTACGGCTCCGGTGGGTTCCTTTAA-CCAAGCCACTGCCTATGAGTCGC 38318 Query 207 TGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAAAGTGG---GCTCCCACTGCT 260 | | |||| | ||| | | | |||| | ||| ||| ||||||||||| Sbjct 38317 CGGCTCATTCTTCAACAAGCATGCAGCTAGAGCCC-------TGGCCTCCTCCCACTGCT 38265 Query 261 TGTACGCATACGGTTTCAGGATCTATTTCACTC 293 || || |||||||||| || ||||||||| Sbjct 38264 TGGGAGCTTACGGTTTCATATTCAATTTCACTC 38232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241255220096