Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq9597 264 2e-68 seq10839 141 1e-31 seq3590 141 1e-31 >seq9597 Length=11437 Score = 264 bits (292), Expect = 2e-68 Identities = 223/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 9257 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 9198 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 9197 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 9138 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 9137 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 9078 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 9077 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 9018 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || |||||||||| | || |||||||||||| Sbjct 9017 CCTACAGCCCCAGGTGGCGAAGAGCCGACATCG 8985 Score = 253 bits (280), Expect = 3e-65 Identities = 213/260 (82%), Gaps = 1/260 (0%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75 ||||||||| |||||| |||||| ||| |||| ||| |||||| | | | | |||| Sbjct 11429 CTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCA 11370 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 | ||||||| |||||||||| |||| ||| ||||||||||||||| ||| || |||| Sbjct 11369 CGATAACTGGTACACCAGAGGTGCGTCCTTCCTGGTCCTCTCGTACTAGGGAAAGGTCCT 11310 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||||| || |||||||| |||||| ||||| ||||||||| ||||||||||||||| Sbjct 11309 CTCAATGCTCTAACGCCCACACCGGATATGGACCAAACTGTCTCACGACGTTCTGAACCC 11250 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 ||||| ||| || ||||||||||||||||||||||||||||| || | || ||||||||| Sbjct 11249 AGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATCCTACAGCCCCAG 11190 Query 256 GATGAGACGAGCCGACATCG 275 | | || |||||||||||| Sbjct 11189 GTGGCGAAGAGCCGACATCG 11170 >seq10839 Length=6436 Score = 141 bits (156), Expect = 1e-31 Identities = 181/249 (73%), Gaps = 4/249 (2%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| || | Sbjct 3460 CAGCAGTTCTTCCATACTAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCAGTAC 3519 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCC-- 146 |||| ||||| | ||| ||| |||||||||||||| || |||||| || | ||| Sbjct 3520 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTTGCAGTTCTCCCT 3579 Query 147 --TACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || | || |||||| ||| ||||||| | || ||||| |||||| ||| ||| Sbjct 3580 TTAACACTAACAGTAGATAGGAACCTAACTGTCGCATGATGTTCTAAACCCAACTCACGT 3639 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| | ||||| || ||||||| |||||| || || |||||||||| || | Sbjct 3640 ACCACTTGAATCAGTGAACAACCAAACCCTTAGGACCTTCTCCAACCCCAGGATGTGATG 3699 Query 265 AGCCGACAT 273 || |||||| Sbjct 3700 AGTCGACAT 3708 >seq3590 Length=62634 Score = 141 bits (156), Expect = 1e-31 Identities = 181/249 (73%), Gaps = 4/249 (2%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| || || ||| |||||| ||||| || | Sbjct 216 CAGCAGTTCTTCCATACCAACTTAGCTGCCTGGCGCTGCTATTGGCATAACAACCAGTAC 275 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| ||||||||||||| | ||||||| || | ||| Sbjct 276 ACCATAGGTTGGCCCAACCCAATCCTCTCGTACTAGTGTTGGCTCCTCGCAGTTCTCCCT 335 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || || |||||| || ||||| || | ||| ||||| |||||| ||| ||| Sbjct 336 TTAACACCAACAGTAGATAGGAACTGAACTATCGCACGATGTTCTAAACCCAACTCACGT 395 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| || ||| | || |||||||||||||| || || |||||||||| || | Sbjct 396 ACCACTTGAATCGGTGAAGAACCGAACCCTTGGGACCTTCTCCAACCCCAGGATGTGATG 455 Query 265 AGCCGACAT 273 || |||||| Sbjct 456 AGTCGACAT 464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780589955284