Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq9597 246 7e-63 seq3634 98.7 2e-18 seq1517 87.8 4e-15 seq1811 73.4 1e-10 >seq9597 Length=11437 Score = 246 bits (272), Expect = 7e-63 Identities = 298/404 (74%), Gaps = 30/404 (7%) Strand=Plus/Minus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| |||||||| | | |||||||||| ||| | |||||||| ||||||||| | || Sbjct 4582 ACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAA 4523 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 4522 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 4463 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||||||||| Sbjct 4462 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 4403 Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250 ||||| | | | | ||| || | || | | ||| |||| || | Sbjct 4402 TAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTACTCCT-TTTGCTCCTCA 4354 Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310 | | || | ||||||||| |||||||||| ||| | ||||||| ||||| ||| Sbjct 4353 GCC--TACGGGGTATTAGCAGCCGTTTCCAGCCGTTGTTCCCCTCCCAAGGGCAGGTTCT 4296 Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370 | |||||||||||| ||||||| ||| || || |||| ||| Sbjct 4295 TGCGCGTTACTCACCCGTTCGCCACT------AGAAACACCA-----CTTC------CCG 4253 Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | |||||||||||| ||| || ||||||||||||||| ||||| Sbjct 4252 TCCGACTTGCATGTTTTAAGCATGCCGCCAGCGTTCATCCTGAG 4209 >seq3634 Length=53635 Score = 98.7 bits (108), Expect = 2e-18 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| | | | || ||| ||| ||||| || || Sbjct 30767 CTTTACAAGCGGCATTGCCCTTCTTCACTTATGAGATATTGCTAGATCGGGCTTTCGTCC 30708 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||| |||| | ||| | ||||||| |||||||||||| |||| Sbjct 30707 ATTGTCCAAGATTCCCCATGGCTGTCCCCCATGGGAGTCTAAGCCGTGTCTCAGTCCCAG 30648 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 ||||| || |||||| ||| ||| | | ||| | || ||| || ||||| Sbjct 30647 TGTGGTTGATCATCCAAAACGACTAGCCAAGCATCACTGGCTTGGTTAGCTTTTACCTGA 30588 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 30587 CCAACTACCTAAT 30575 >seq1517 Length=108292 Score = 87.8 bits (96), Expect = 4e-15 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 18 GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCC 77 |||||| | | | | || |||| ||| | |||||||| ||||||||||| || |||||| Sbjct 30059 GGCCTTTTACCTCAATGCAGCATTGCTCCGTCAGGCTTTCGCCCATTGTGGAAAATTCCC 30000 Query 78 CACTGCTGCCTCCCGTAGGAGTC 100 |||||||||||||||| |||||| Sbjct 29999 CACTGCTGCCTCCCGTGGGAGTC 29977 >seq1811 Length=91737 Score = 73.4 bits (80), Expect = 1e-10 Identities = 72/93 (77%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 58 GCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTT 117 ||||| || || |||| | |||||| ||||| |||||| ||||| |||| ||| || Sbjct 6499 GCCCACCGTAGAAAATTCTCAACTGCTACCTCCTGTAGGATTCTGGGTCGTGCCTCTGTC 6440 Query 118 CCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 | |||| |||| ||||||||||| || ||||| Sbjct 6439 CTAGTGAGGCTAATCATCCTCTCAAACTAGCTA 6407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222060551744