Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq9597 320 5e-85 seq3634 172 2e-40 seq1517 84.2 7e-14 >seq9597 Length=11437 Score = 320 bits (354), Expect = 5e-85 Identities = 278/343 (81%), Gaps = 3/343 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 4391 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 4450 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 4451 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 4510 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 4511 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 4570 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 ||||| |||||| | || || | | | ||||| |||||||||| || ||| Sbjct 4571 AGGCCCACGGGTCATGAACTCCTTTTCCCGGAGAAGAAGCAATGACGGTATCTGGGGAAT 4630 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| ||||||||||||||||||| ||| ||| || ||||||||||| Sbjct 4631 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACGGAGGATGCAAGCGTTATCCG 4690 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || ||||||| Sbjct 4691 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 4732 >seq3634 Length=53635 Score = 172 bits (190), Expect = 2e-40 Identities = 241/331 (73%), Gaps = 14/331 (4%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGC---GACGATCAG-TAGCCGACCTGA 223 ||||| |||||||| |||||| ||| |||||| | || | | | ||| || || Sbjct 30575 ATTAGGTAGTTGGTCAGGTAAAAGCTAACCAAGCCAGTGATGCTTGGCTAGTCGTTTTG- 30633 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 | ||||| ||||| ||| |||||||||||| | ||||| | ||| | |||| | Sbjct 30634 ---GATGATCAACCACACTGGGACTGAGACACGGCTTAGACTCCCATGGGGGACAGCCAT 30690 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC 343 ||||||| ||| ||||||| | |||||| ||| ||||| | | | || || ||||| Sbjct 30691 GGGGAATCTTGGACAATGGACGAAAGCCCGATCTAGCAATATCTCATAAGTGAAGAAGGG 30750 Query 344 C--TTCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAA 399 | | | | | |||||||||| || || | | | ||| ||||| | ||| | ||| ||| Sbjct 30751 CAATGCCGCTTGTAAAGCTCTTTCATCGAGTGCATGATCATGACAGGACTCGGGGAAGAA 30810 Query 400 GCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGA 459 |||| |||||||| |||||||| |||| |||||| || |||||| || ||| | |||| Sbjct 30811 GCCCTGGCTAACTCCGTGCCAGTAGCCACGGTAAAAC-CGGGGGGCAAGTGTTTTTCGGA 30869 Query 460 ATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || ||| ||| ||||||| |||||||||| Sbjct 30870 ATGACT-AGGCATAAAGGGCACGTAGGTGGT 30899 >seq1517 Length=108292 Score = 84.2 bits (92), Expect = 7e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 263 ACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAA 322 ||||| |||||||||||||||||||||| || |||||||||| ||||||||| | ||||| Sbjct 29978 ACTCCCACGGGAGGCAGCAGTGGGGAATTTTCCACAATGGGCGAAAGCCTGACGGAGCAA 30037 Query 323 CGCCGC 328 || || Sbjct 30038 TGCTGC 30043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497184131456