Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq9597 273 5e-71 seq3634 147 5e-33 >seq9597 Length=11437 Score = 273 bits (302), Expect = 5e-71 Identities = 305/405 (75%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| ||||||||||||||||||| ||| ||| || ||| Sbjct 4623 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACGGAGGATGCAAGC 4682 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 4683 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 4742 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 4743 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTCCGGTAGGGGCA 4802 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| ||||||||||||||| || || | | |||||||| |||||| Sbjct 4803 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTTGAGATCGGAAAGAACACCAAGGGCGAA 4862 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 ||| |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 4863 AGCGCTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 4922 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 ||| |||| ||||||| ||||||||||||| |||||||| | | | ||| || | Sbjct 4923 AGAGACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 4981 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 4982 GTGCAGTGCTGGAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 5026 >seq3634 Length=53635 Score = 147 bits (162), Expect = 5e-33 Identities = 285/411 (69%), Gaps = 15/411 (4%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| | ||| ||||||| |||||||| |||||||| |||| |||||| || |||||| Sbjct 30798 ACTCGGGGAAGAAGCCCTGGCTAACTCCGTGCCAGTAGCCACGGTAAAACCG-GGGGGCA 30856 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||| ||| ||||||| |||||||||| | | || | ||| Sbjct 30857 AGTGTTTTTCGGAATGACTAGGCATAAAGGGCACGTAGGTGGTGAATCAGGTTGAAAGTG 30916 Query 122 AAAGGCTATGGCTCAACCCCGGGAC-TGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 |||| | | || | | || |||| ||||||| || | ||| | || Sbjct 30917 AAAGTCAC---CAAAAACTGGCGAAATGCTCTTGAAAC--CAATTCACTTGTGTAAGACA 30971 Query 181 GGCAAG--TGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGT 238 | ||| ||||||| | ||| || |||||||| | |||| | || |||||| ||| Sbjct 30972 GAGAAGAGTGGAATTTCGTGTGGAGGGGTGAAATCCAAAGATCTAAGAAGGAACGCCAAA 31031 Query 239 GGCGAAGGCGGCTTGCTGGA-CTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 | || ||| ||| ||| || || | | ||| || |||||| |||| |||||| Sbjct 31032 AGTGATGGCAGCTCTTTGGGTCTCTACCA-ATGCTGGGGTGTGAAAGCATGGGTAGCAAA 31090 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCA 357 | ||||||||||||||||||||||| |||||||| ||||| | | | | || || Sbjct 31091 CGGGATTAGATACCCTGGTAGTCCATGCCGTAAATGATGAGTGTTTGCCCTTGGTCTACA 31150 Query 358 TAAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | || || ||| |||| || ||| || | ||||||||||||||| Sbjct 31151 CA---GATCAGGGGCC-CAGCTAATGCATGAAACACTCCACCTGGGGAGTA 31197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202865883392