Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq3590 183 1e-43 seq9597 125 2e-26 seq9851 113 2e-22 seq4338 100 1e-18 >seq3590 Length=62634 Score = 183 bits (202), Expect = 1e-43 Identities = 324/461 (70%), Gaps = 26/461 (6%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| |||| Sbjct 2658 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 2599 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 2598 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 2539 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || ||| | ||| |||||||||| || ||||| |||||| |||| || | | || Sbjct 2538 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 2481 Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG---TCATTGCGACTTACCAAAC 267 | || | | ||||||||||| |||||||| | |||| || |||||||| | Sbjct 2480 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACC 2421 Query 268 CATTGCAAACTCCGAATGC--GC----ATCAGTTTTACCGCGGGAGTGAGGGCATGGGTG 321 | | ||||||||||| | || ||| || ||| | || | | ||||| Sbjct 2420 CCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTACAGACAGACTTTTG----GGGTG 2365 Query 322 CTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACA 381 ||||| ||| ||||||| || | || || | ||||||| ||| || | Sbjct 2364 CTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATC 2305 Query 382 GCTAAGTTAAACTAACGAAG-TCT-GATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGC 439 || ||| || || |||| ||| || || | |||| | |||| || ||||||||||| Sbjct 2304 ACTTAGTGGAA--AAGGAAGTTCTCGA--GCGATGACAACCAGGAGGTGGGCTTGGAAGC 2249 Query 440 AGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 ||||| || ||| |||| |||||| |||||||| ||| || Sbjct 2248 AGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 2209 >seq9597 Length=11437 Score = 125 bits (138), Expect = 2e-26 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||||| Sbjct 7425 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 7484 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 7485 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 7544 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 7545 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTC 7603 >seq9851 Length=9393 Score = 113 bits (124), Expect = 2e-22 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | ||||| || | |||||||| ||||| Sbjct 4120 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCAAACCTGGGTGATCTATCCATG 4061 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||| ||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 4060 ACCAAGATGAAGTTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 4001 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 | ||||||| |||| ||||||||||| || | ||||| || ||||| ||| || Sbjct 4000 AACGGATGAGTTGTGATTAGGGGTGAAATGCCACTCAAACCCAGAGCTAGCTAGTTTTCC 3941 Query 182 CCGAAAACTATTTAGGT 198 |||||| ||| |||| Sbjct 3940 CCGAAATGCATTGAGGT 3924 >seq4338 Length=41625 Score = 100 bits (110), Expect = 1e-18 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 48 GTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACT 107 |||||||| ||||| ||| ||||||| | ||| | || |||||||||||||| ||| Sbjct 38418 GTGATCTATCCATGACCAAGATGAAGCTTGGGTGAAACTAAATGGAGGTCCGAACCGACT 38477 Query 108 AATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAA 167 ||||||||| ||| || |||||| | ||| ||||||||||| | | | ||| | Sbjct 38478 AATGTTGAAGAATCAGCAGATGAGTTATGGTTAGGGGTGAAATGTCACTCGAACCCAAAG 38537 Query 168 ATAGCTGGTTCTCTCCGAAA 187 ||||||||| || |||||| Sbjct 38538 CTAGCTGGTTTTCCCCGAAA 38557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689130814976