Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq715 206 2e-48
seq318 192 5e-44
>seq715
Length=381403
Score = 206 bits (228), Expect = 2e-48
Identities = 582/878 (66%), Gaps = 27/878 (3%)
Strand=Plus/Minus
Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123
||||||| ||| | || ||| || ||| |||||||| ||||| || || |||||||
Sbjct 115820 TGTTCCCGATCCAATACCCGGAAATCTGGGAGATGTACAAGAAGGCAGAGGCCTCCTTCT 115761
Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183
|||| | ||||||||||| |||||| | ||| | | ||||| | | | || | ||
Sbjct 115760 GGACAGCCGAGGAGGTCGACTTGTCCCAGGACCTCCCTCACTGGAAC--TCTCTC-ACCG 115704
Query 61184 GTGAACAAC---ATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCG 61240
||| | | | ||||| | || || | || ||||| ||||| || || || ||||
Sbjct 115703 CTGACGAGCGCCACTTCATCACCCACGTCCTCGCATTCTTCGCCGCCTCCGATGGCATCG 115644
Query 61241 TCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTT 61300
|| || ||| | | | | ||| | ||||| | || ||| ||||||| ||| |
Sbjct 115643 TCCTCGAAAATCTCGCCGGAAGGTTCATGAAGGAGATCCAGGTGGCGGAGGCTCGTGCCT 115584
Query 61301 TCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCG 61360
| |||||||||||||| ||||| ||||| | ||||| |||||||| ||| | || |||
Sbjct 115583 TATACGGCTTCCAGATCGCCATCGAGAACATTCACTCTGAGATGTATAGTCTCCTGCTCG 115524
Query 61361 ATACGTACATCAGGGA--GCGGGCGGAACGTGAAC-GATTGTTCAATGCCATCGAGACGA 61417
| || ||| ||| ||| | ||| |||| | | ||| | |||||||| |||
Sbjct 115523 AAACCTACGTCAAGGATTCCAATGAGAA---GAACAAACTCTTCCACGCCATCGAAACGG 115467
Query 61418 TACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTA 61477
| ||| || || ||| || || ||||| | || |||||| | | | | |
Sbjct 115466 TGCCGTGCGTCCAGAAGAAGGCTGAGTGGGCGCTGAAATGGATCGACGGATCCAAG---T 115410
Query 61478 CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGT 61537
| || | || || | || || || || || ||||| | || ||| |||| |
Sbjct 115409 CGTTCGCGGAGCGGCTCCTCGCGTTCGCTTGCGTGGAGGGGATTTTCTTCTCTGGAAGCT 115350
Query 61538 TTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG 61597
| ||| || ||||||||||| || || || | ||||| || |||| ||| || |
Sbjct 115349 TCTGCGCGATATTTTGGTTGAAAAAGCG-GGGTTGATGCCTGGGTTGACTTTCTCGAACG 115291
Query 61598 AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCT 61657
||||||| || || || || ||| | || || ||||| || ||||| | |||
Sbjct 115290 AGTTGATCTCGCGAGATGAAGGCCTTCACTGCGATTTCGCGTGCTTGCTCT----ACG-G 115236
Query 61658 ATCTGGTGA--ATCGTCCGTCG-GAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAA 61714
|| || ||| || | | | |||| || || | | ||| || || || |||||
Sbjct 115235 AT-TGCTGAGGATGAAGCTTAGCAAGGAACGAGTCAGGGGGATCGTGCGCGACGCGGTGG 115177
Query 61715 CTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTG 61774
|||||| ||| ||| || |||||| ||||| | | | | || ||||| |||
Sbjct 115176 ATATCGAGAGGGAGTTTGTGTGCGACGCTCTGCCCTGCGCTTTGGTGGGAATGAACGGTG 115117
Query 61775 GACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTT-GGGTATG 61833
||| ||| |||||||| || || || || || || ||| ||| || ||| ||||| |
Sbjct 115116 AACTTATGAGCCAGTATATCGAGTTCGTGGCGGATCGGCTGCTGGACGCTTTAGGGTACG 115057
Query 61834 AAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGC 61893
|||| || ||| | || || ||||||| ||||| | |||||| || | ||
Sbjct 115056 -GTAGGATGTACAATGTGGCGAATCCGTTTGATTGGATGGAGTTAATTTCGTTGCAAGGG 114998
Query 61894 AAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931
||||||||||| |||||||| | || || || || ||
Sbjct 114997 AAGACGAATTTCTTCGAGAAGAGGGTCGGTGAGTACCA 114960
>seq318
Length=266665
Score = 192 bits (212), Expect = 5e-44
Identities = 573/873 (66%), Gaps = 16/873 (2%)
Strand=Plus/Minus
Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123
||||||| ||| |||| | || ||| |||||||| ||||| || || |||||||
Sbjct 56453 TGTTCCCGATCCAGTACCCCCAAATCTGGGAGATGTACAAGAAGGCTGAGGCCTCCTTCT 56394
Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG-CGTTTATCGAGC 61182
|||| | ||||||||||| | ||| | ||| | ||||||| | | | |||
Sbjct 56393 GGACTGCTGAGGAGGTCGACCTCTCCCAGGACCTCCGCCACTGGGACTCCCTCACCGAT- 56335
Query 61183 GGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTC 61242
|| || | ||||| || | || || | || ||||| ||||| || ||||| ||||||
Sbjct 56334 GGCGAGCGCCATTTTATCACCCACGTCCTCGCTTTCTTCGCCGCCTCCGACGGAATCGTC 56275
Query 61243 AATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302
||||| | | || ||| | ||||||| || || |||| || || |||
Sbjct 56274 CTCGAGAACCTTGCTGCTCGCTTCATGAAGGAGGTCCAGGTCGCGGAAGCCCGAGCCTTC 56215
Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362
|| ||||||||||| ||||| ||||| | ||||| ||||||||||| | ||| ||||
Sbjct 56214 TATGGCTTCCAGATCGCCATTGAGAACATTCACTCCGAGATGTACAGCCTCCTCCTCGAG 56155
Query 61363 ACGTACATCAGGGA--GCGGGCGGAACGTGAAC-GATTGTTCAATGCCATCGAGACGATA 61419
|| || |||| ||| || ||| |||| | | ||| |||||||||| | | |
Sbjct 56154 ACCTATATCAAGGACTCCGATGAGAA---GAACAAACTCTTCCATGCCATCGACATGGTG 56098
Query 61420 CCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA 61479
|| |||||| ||| ||||||||||| |||| |||||| | || | | |
Sbjct 56097 CCCTGCGTGAAGAAGAAGGCGGATTGGGCTCTCAAGTGGATCGGCGGT---GCCGAGAGC 56041
Query 61480 TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTT 61539
|| | || || || | || || || |||||||| | || ||| || ||
Sbjct 56040 TTCGCCGAGCGGCTGATCGCGTTCGCTTGCGTCGAGGGGATTTTCTTCTCCGGGAGTTTC 55981
Query 61540 GCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAG 61599
||| || || ||| ||||||| || || || ||||| || ||||||||| || ||
Sbjct 55980 TGCGCGATATTCTGGCTGAAGAAGCGCGGGCTAATGCCGGGACTGACCTTCTCGAACGAA 55921
Query 61600 TTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAAC-GCTA 61658
||||| || || |||||||| | || || || || ||| ||||| | | ||| |||
Sbjct 55920 TTGATCTCGCGAGACGAGGGTCTACACTGCGACTTCGCTTGCTTGCTCTACGAACTGCT- 55862
Query 61659 TCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTAT 61718
| ||| | | || |||||||| ||| | ||| ||| | || ||||| ||
Sbjct 55861 GAAGACGAAGC-TGAGT--GAGGAGCGCGTGAAGGGGATCGTTAGGGATGCGGTGGACAT 55805
Query 61719 CGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACT 61778
||| ||| ||| || ||||| |||| | | | | |||||||| | | ||
Sbjct 55804 CGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTGCGCCTTGGTGGGCATGAACGGCGACCT 55745
Query 61779 AATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCG 61838
||| ||||| || || || || || || || || ||| | | || |
Sbjct 55744 TATGAGCCAGTACATCGAGTTCGTGGCAGATCGCTTGCTGGGGGCGCTCGGCTGCGGGAA 55685
Query 61839 GATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGAC 61898
||| || | | ||||| ||||| | ||||| |||| ||||| | || |||||
Sbjct 55684 GATATACGGTGTGGCCAACCCGTTTGACTGGATGGAGCTGATCTCGCTTCAGGGGAAGAC 55625
Query 61899 GAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931
||||| ||||||||| | || ||||| || ||
Sbjct 55624 CAATTTCTTCGAGAAAAGGGTCGGCGAGTACCA 55592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397433449198160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |