Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq715 206 2e-48 seq318 192 5e-44 >seq715 Length=381403 Score = 206 bits (228), Expect = 2e-48 Identities = 582/878 (66%), Gaps = 27/878 (3%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| | || ||| || ||| |||||||| ||||| || || ||||||| Sbjct 115820 TGTTCCCGATCCAATACCCGGAAATCTGGGAGATGTACAAGAAGGCAGAGGCCTCCTTCT 115761 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | ||||||||||| |||||| | ||| | | ||||| | | | || | || Sbjct 115760 GGACAGCCGAGGAGGTCGACTTGTCCCAGGACCTCCCTCACTGGAAC--TCTCTC-ACCG 115704 Query 61184 GTGAACAAC---ATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCG 61240 ||| | | | ||||| | || || | || ||||| ||||| || || || |||| Sbjct 115703 CTGACGAGCGCCACTTCATCACCCACGTCCTCGCATTCTTCGCCGCCTCCGATGGCATCG 115644 Query 61241 TCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTT 61300 || || ||| | | | | ||| | ||||| | || ||| ||||||| ||| | Sbjct 115643 TCCTCGAAAATCTCGCCGGAAGGTTCATGAAGGAGATCCAGGTGGCGGAGGCTCGTGCCT 115584 Query 61301 TCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCG 61360 | |||||||||||||| ||||| ||||| | ||||| |||||||| ||| | || ||| Sbjct 115583 TATACGGCTTCCAGATCGCCATCGAGAACATTCACTCTGAGATGTATAGTCTCCTGCTCG 115524 Query 61361 ATACGTACATCAGGGA--GCGGGCGGAACGTGAAC-GATTGTTCAATGCCATCGAGACGA 61417 | || ||| ||| ||| | ||| |||| | | ||| | |||||||| ||| Sbjct 115523 AAACCTACGTCAAGGATTCCAATGAGAA---GAACAAACTCTTCCACGCCATCGAAACGG 115467 Query 61418 TACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTA 61477 | ||| || || ||| || || ||||| | || |||||| | | | | | Sbjct 115466 TGCCGTGCGTCCAGAAGAAGGCTGAGTGGGCGCTGAAATGGATCGACGGATCCAAG---T 115410 Query 61478 CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGT 61537 | || | || || | || || || || || ||||| | || ||| |||| | Sbjct 115409 CGTTCGCGGAGCGGCTCCTCGCGTTCGCTTGCGTGGAGGGGATTTTCTTCTCTGGAAGCT 115350 Query 61538 TTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG 61597 | ||| || ||||||||||| || || || | ||||| || |||| ||| || | Sbjct 115349 TCTGCGCGATATTTTGGTTGAAAAAGCG-GGGTTGATGCCTGGGTTGACTTTCTCGAACG 115291 Query 61598 AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCT 61657 ||||||| || || || || ||| | || || ||||| || ||||| | ||| Sbjct 115290 AGTTGATCTCGCGAGATGAAGGCCTTCACTGCGATTTCGCGTGCTTGCTCT----ACG-G 115236 Query 61658 ATCTGGTGA--ATCGTCCGTCG-GAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAA 61714 || || ||| || | | | |||| || || | | ||| || || || ||||| Sbjct 115235 AT-TGCTGAGGATGAAGCTTAGCAAGGAACGAGTCAGGGGGATCGTGCGCGACGCGGTGG 115177 Query 61715 CTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTG 61774 |||||| ||| ||| || |||||| ||||| | | | | || ||||| ||| Sbjct 115176 ATATCGAGAGGGAGTTTGTGTGCGACGCTCTGCCCTGCGCTTTGGTGGGAATGAACGGTG 115117 Query 61775 GACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTT-GGGTATG 61833 ||| ||| |||||||| || || || || || || ||| ||| || ||| ||||| | Sbjct 115116 AACTTATGAGCCAGTATATCGAGTTCGTGGCGGATCGGCTGCTGGACGCTTTAGGGTACG 115057 Query 61834 AAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGC 61893 |||| || ||| | || || ||||||| ||||| | |||||| || | || Sbjct 115056 -GTAGGATGTACAATGTGGCGAATCCGTTTGATTGGATGGAGTTAATTTCGTTGCAAGGG 114998 Query 61894 AAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||||||||||| |||||||| | || || || || || Sbjct 114997 AAGACGAATTTCTTCGAGAAGAGGGTCGGTGAGTACCA 114960 >seq318 Length=266665 Score = 192 bits (212), Expect = 5e-44 Identities = 573/873 (66%), Gaps = 16/873 (2%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| |||| | || ||| |||||||| ||||| || || ||||||| Sbjct 56453 TGTTCCCGATCCAGTACCCCCAAATCTGGGAGATGTACAAGAAGGCTGAGGCCTCCTTCT 56394 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG-CGTTTATCGAGC 61182 |||| | ||||||||||| | ||| | ||| | ||||||| | | | ||| Sbjct 56393 GGACTGCTGAGGAGGTCGACCTCTCCCAGGACCTCCGCCACTGGGACTCCCTCACCGAT- 56335 Query 61183 GGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTC 61242 || || | ||||| || | || || | || ||||| ||||| || ||||| |||||| Sbjct 56334 GGCGAGCGCCATTTTATCACCCACGTCCTCGCTTTCTTCGCCGCCTCCGACGGAATCGTC 56275 Query 61243 AATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 ||||| | | || ||| | ||||||| || || |||| || || ||| Sbjct 56274 CTCGAGAACCTTGCTGCTCGCTTCATGAAGGAGGTCCAGGTCGCGGAAGCCCGAGCCTTC 56215 Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362 || ||||||||||| ||||| ||||| | ||||| ||||||||||| | ||| |||| Sbjct 56214 TATGGCTTCCAGATCGCCATTGAGAACATTCACTCCGAGATGTACAGCCTCCTCCTCGAG 56155 Query 61363 ACGTACATCAGGGA--GCGGGCGGAACGTGAAC-GATTGTTCAATGCCATCGAGACGATA 61419 || || |||| ||| || ||| |||| | | ||| |||||||||| | | | Sbjct 56154 ACCTATATCAAGGACTCCGATGAGAA---GAACAAACTCTTCCATGCCATCGACATGGTG 56098 Query 61420 CCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA 61479 || |||||| ||| ||||||||||| |||| |||||| | || | | | Sbjct 56097 CCCTGCGTGAAGAAGAAGGCGGATTGGGCTCTCAAGTGGATCGGCGGT---GCCGAGAGC 56041 Query 61480 TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTT 61539 || | || || || | || || || |||||||| | || ||| || || Sbjct 56040 TTCGCCGAGCGGCTGATCGCGTTCGCTTGCGTCGAGGGGATTTTCTTCTCCGGGAGTTTC 55981 Query 61540 GCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAG 61599 ||| || || ||| ||||||| || || || ||||| || ||||||||| || || Sbjct 55980 TGCGCGATATTCTGGCTGAAGAAGCGCGGGCTAATGCCGGGACTGACCTTCTCGAACGAA 55921 Query 61600 TTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAAC-GCTA 61658 ||||| || || |||||||| | || || || || ||| ||||| | | ||| ||| Sbjct 55920 TTGATCTCGCGAGACGAGGGTCTACACTGCGACTTCGCTTGCTTGCTCTACGAACTGCT- 55862 Query 61659 TCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTAT 61718 | ||| | | || |||||||| ||| | ||| ||| | || ||||| || Sbjct 55861 GAAGACGAAGC-TGAGT--GAGGAGCGCGTGAAGGGGATCGTTAGGGATGCGGTGGACAT 55805 Query 61719 CGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACT 61778 ||| ||| ||| || ||||| |||| | | | | |||||||| | | || Sbjct 55804 CGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTGCGCCTTGGTGGGCATGAACGGCGACCT 55745 Query 61779 AATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCG 61838 ||| ||||| || || || || || || || || ||| | | || | Sbjct 55744 TATGAGCCAGTACATCGAGTTCGTGGCAGATCGCTTGCTGGGGGCGCTCGGCTGCGGGAA 55685 Query 61839 GATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGAC 61898 ||| || | | ||||| ||||| | ||||| |||| ||||| | || ||||| Sbjct 55684 GATATACGGTGTGGCCAACCCGTTTGACTGGATGGAGCTGATCTCGCTTCAGGGGAAGAC 55625 Query 61899 GAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||||| ||||||||| | || ||||| || || Sbjct 55624 CAATTTCTTCGAGAAAAGGGTCGGCGAGTACCA 55592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397433449198160