Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq752 316 2e-81 seq1263 275 7e-69 seq2510 152 6e-32 seq124 107 2e-18 seq37 84.2 2e-11 >seq752 Length=193215 Score = 316 bits (350), Expect = 2e-81 Identities = 483/679 (71%), Gaps = 8/679 (1%) Strand=Plus/Minus Query 161581 CTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACG 161640 || ||||| ||| ||| | ||| | || || ||| |||| || || || || | || Sbjct 189612 CTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACT 189553 Query 161641 AGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAATTTTCTTA-CAG 161698 |||||||| |||||| | |||||||||||| | || || ||||| ||||||| | | Sbjct 189552 TCATGGTATACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCG 189495 Query 161699 CGGCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCT 161757 | |||||| ||||| || | | | | ||||| || || || || || |||||| Sbjct 189494 CCGCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCG-TTGTTGTTACTATGAGGTCCT 189436 Query 161758 GAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCG 161817 || || ||||| ||||| | ||| |||| | || || || |||| ||||| || Sbjct 189435 GAAGCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCT 189376 Query 161818 CTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCT 161876 |||||||| |||||| || || || || ||| | ||||| ||||||||||||| ||| Sbjct 189375 CTCCACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCT 189316 Query 161877 TATCGGTATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAG 161936 || | | || ||||| ||||| || || ||||||| ||| |||||||||||||| Sbjct 189315 GTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTC 189257 Query 161937 CGTCTTTCTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGT 161996 || || || || ||||| || || ||||| |||||||| ||||| ||||| || Sbjct 189256 TGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGT 189197 Query 161997 TGCCGCTATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCC 162056 || ||||| || | ||| | ||||| | ||||| || || |||||||| | || || Sbjct 189196 AGCGGCTATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCC 189137 Query 162057 GTTCCACATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGG 162116 || || |||||||| || || ||| | ||||| | ||| |||| | ||||| || || Sbjct 189136 ATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGG 189077 Query 162117 TGTGACTGTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTT 162176 || ||||| ||||| || | | |||||||||| |||||||| ||| || || Sbjct 189076 TGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTT 189017 Query 162177 TGACTCTACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACA 162236 | || | || |||| || || ||||| || ||||| || || ||||| || ||||| || Sbjct 189016 TAACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCA 188957 Query 162237 GATCTTCGGTATTGCTTTT 162255 ||||| || |||||||| Sbjct 188956 AATCTTTGGGGTTGCTTTT 188938 >seq1263 Length=120960 Score = 275 bits (304), Expect = 7e-69 Identities = 414/580 (71%), Gaps = 8/580 (1%) Strand=Plus/Plus Query 161592 TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATAC 161651 ||| ||| | ||| | || || ||| |||| || || || || | || |||||||| Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865 Query 161652 CCATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAATTTTCTTA-CAGCGGCAGTTAGC 161709 |||||| | |||||||||||| | || || ||||| ||||||| | || |||||| Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 54923 Query 161710 ACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGG 161768 ||||| || | | | | ||||| || || || || ||||||||||| || ||||| Sbjct 54924 ACTCCTGCCAATAGTTTAGCACATTCG-TTGTTGTTACTATGGGGTCCTGAAGCCCAAGG 54982 Query 161769 GGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGC 161828 ||||| | ||| |||| | || || || |||| ||||| || |||||||| || Sbjct 54983 AGATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGC 55042 Query 161829 TTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCC 161887 ||||| || || || || ||| | ||||| |||||||||||||| ||| || | | | Sbjct 55043 TTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGC 55101 Query 161888 GTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCA 161947 | ||||| ||||| || || ||||||| ||| |||||||||||||| || || || | Sbjct 55102 GACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGA 55161 Query 161948 TATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTT 162007 | ||||| || || ||||| |||||||| ||||| ||||| || || ||||| | Sbjct 55162 TTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATAT 55221 Query 162008 TCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGA 162067 | | ||| | ||||| | ||||| || || |||||||| | || || || || |||| Sbjct 55222 TTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGA 55281 Query 162068 TGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTG 162127 |||| || || ||| | ||||| | ||| |||| | ||||| || |||| | ||| | Sbjct 55282 TGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAG 55341 Query 162128 AAAACACGCTCTACCAAGATGGTGAACAAGCAAATACTTT 162167 |||| || | | |||||||||| |||||||| || Sbjct 55342 AAAATACTTTATTTGAAGATGGTGATGCTGCAAATACATT 55381 >seq2510 Length=74850 Score = 152 bits (168), Expect = 6e-32 Identities = 141/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 162334 GGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAG 162393 || || ||||| || || || || || ||||| | || ||||| || ||||||||||| Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941 Query 162394 GATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCA 162453 |||||||||||||| || ||||||||||| ||||| || || || |||||| ||||||| Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881 Query 162454 TGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCC 162512 ||| |||| | ||||| || ||||| ||| || ||||||||||||| ||||| || Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 56822 >seq124 Length=378598 Score = 107 bits (118), Expect = 2e-18 Identities = 169/237 (71%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 160960 GATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGT 161019 |||||| | | |||||||||| ||||| | ||||| | ||| || ||||| || Sbjct 235667 GATGATGAGTTCATCCTTGACGCAGCTGAGAATGCAGGGATGGACCTGCCATACTCGTGC 235726 Query 161020 CGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGA-GAGTGGTACTGTAGATCAATC 161078 | ||||| |||||||| || || || || ||||| | ||| || || || |||||||| Sbjct 235727 AGGGCTGGGGCTTGCTCAACATGCGCGGGGAAGATCGTTGAG-GGAACAGTGGATCAATC 235785 Query 161079 TGATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGC 161138 ||| || ||||| ||||| || ||| | || || | ||| ||||| |||||| | Sbjct 235786 TGACGGGTCATTCCTTGATGACGACCAAATGGAGAAGGGTTATGTGCTGACATGCGTTTC 235845 Query 161139 TTATCCCACTTCTGATGTAACTATTCTTGCCGAGCAAGAAGAGT-CTCTTTACTAAA 161194 ||||| ||||| ||| |||| | || | |||| ||||| ||||||||||| Sbjct 235846 ATATCCAACTTCGGATTGTGTGATTCATACCCA-CAAGGAGAGTGATCTTTACTAAA 235901 >seq37 Length=530226 Score = 84.2 bits (92), Expect = 2e-11 Identities = 177/263 (67%), Gaps = 1/263 (0%) Strand=Plus/Plus Query 162143 AAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTT 162202 |||||||||| || ||||| || || ||| | | || |||| | || |||| Sbjct 49822 AAGATGGTGATTGTGCTAATACATTTTGTGCGTTTAATCCAACCCAAGTTGGAGAAACTT 49881 Query 162203 ACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATA 162262 | || ||||| || || ||||| || ||||| || ||||| || || |||| |||| Sbjct 49882 ATTCAATGGTCACCGCTAACCGCTT-TGGTCCCAAATCTTTGGGGTTTTTTTTTCCAATA 49940 Query 162263 AGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTA 162322 | ||||||| ||||| |||||| || || | || | ||| | |||| || || Sbjct 49941 AATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACCGGTTTATGGATGAGAGCTC 50000 Query 162323 TCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTC 162382 | | | || || ||| | || || || | || | ||| || || || || || Sbjct 50001 CTAGAGTAGTCGGTCTGGCTTTGAACCTACGCACCTATGGCTTCGTTTCCCAAGAAATCT 50060 Query 162383 GTGCAGCGGAGGATCCTGAATTT 162405 |||||||||| |||||||||||| Sbjct 50061 GTGCAGCGGAAGATCCTGAATTT 50083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551184610498200