Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_031903.1
Length=172345
Score E
Sequences producing significant alignments: (Bits) Value
seq752 316 2e-81
seq1263 275 7e-69
seq2510 152 6e-32
seq124 107 2e-18
seq37 84.2 2e-11
>seq752
Length=193215
Score = 316 bits (350), Expect = 2e-81
Identities = 483/679 (71%), Gaps = 8/679 (1%)
Strand=Plus/Minus
Query 161581 CTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACG 161640
|| ||||| ||| ||| | ||| | || || ||| |||| || || || || | ||
Sbjct 189612 CTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACT 189553
Query 161641 AGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAATTTTCTTA-CAG 161698
|||||||| |||||| | |||||||||||| | || || ||||| ||||||| | |
Sbjct 189552 TCATGGTATACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCG 189495
Query 161699 CGGCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCT 161757
| |||||| ||||| || | | | | ||||| || || || || || ||||||
Sbjct 189494 CCGCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCG-TTGTTGTTACTATGAGGTCCT 189436
Query 161758 GAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCG 161817
|| || ||||| ||||| | ||| |||| | || || || |||| ||||| ||
Sbjct 189435 GAAGCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCT 189376
Query 161818 CTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCT 161876
|||||||| |||||| || || || || ||| | ||||| ||||||||||||| |||
Sbjct 189375 CTCCACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCT 189316
Query 161877 TATCGGTATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAG 161936
|| | | || ||||| ||||| || || ||||||| ||| ||||||||||||||
Sbjct 189315 GTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTC 189257
Query 161937 CGTCTTTCTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGT 161996
|| || || || ||||| || || ||||| |||||||| ||||| ||||| ||
Sbjct 189256 TGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGT 189197
Query 161997 TGCCGCTATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCC 162056
|| ||||| || | ||| | ||||| | ||||| || || |||||||| | || ||
Sbjct 189196 AGCGGCTATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCC 189137
Query 162057 GTTCCACATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGG 162116
|| || |||||||| || || ||| | ||||| | ||| |||| | ||||| || ||
Sbjct 189136 ATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGG 189077
Query 162117 TGTGACTGTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTT 162176
|| ||||| ||||| || | | |||||||||| |||||||| ||| || ||
Sbjct 189076 TGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTT 189017
Query 162177 TGACTCTACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACA 162236
| || | || |||| || || ||||| || ||||| || || ||||| || ||||| ||
Sbjct 189016 TAACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCA 188957
Query 162237 GATCTTCGGTATTGCTTTT 162255
||||| || ||||||||
Sbjct 188956 AATCTTTGGGGTTGCTTTT 188938
>seq1263
Length=120960
Score = 275 bits (304), Expect = 7e-69
Identities = 414/580 (71%), Gaps = 8/580 (1%)
Strand=Plus/Plus
Query 161592 TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATAC 161651
||| ||| | ||| | || || ||| |||| || || || || | || ||||||||
Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865
Query 161652 CCATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAATTTTCTTA-CAGCGGCAGTTAGC 161709
|||||| | |||||||||||| | || || ||||| ||||||| | || ||||||
Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACCGCCGCAGTTTCG 54923
Query 161710 ACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGG 161768
||||| || | | | | ||||| || || || || ||||||||||| || |||||
Sbjct 54924 ACTCCTGCCAATAGTTTAGCACATTCG-TTGTTGTTACTATGGGGTCCTGAAGCCCAAGG 54982
Query 161769 GGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGC 161828
||||| | ||| |||| | || || || |||| ||||| || |||||||| ||
Sbjct 54983 AGATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGC 55042
Query 161829 TTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCC 161887
||||| || || || || ||| | ||||| |||||||||||||| ||| || | | |
Sbjct 55043 TTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGC 55101
Query 161888 GTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCA 161947
| ||||| ||||| || || ||||||| ||| |||||||||||||| || || || |
Sbjct 55102 GACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGA 55161
Query 161948 TATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTT 162007
| ||||| || || ||||| |||||||| ||||| ||||| || || ||||| |
Sbjct 55162 TTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATAT 55221
Query 162008 TCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGA 162067
| | ||| | ||||| | ||||| || || |||||||| | || || || || ||||
Sbjct 55222 TTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGA 55281
Query 162068 TGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTG 162127
|||| || || ||| | ||||| | ||| |||| | ||||| || |||| | ||| |
Sbjct 55282 TGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAG 55341
Query 162128 AAAACACGCTCTACCAAGATGGTGAACAAGCAAATACTTT 162167
|||| || | | |||||||||| |||||||| ||
Sbjct 55342 AAAATACTTTATTTGAAGATGGTGATGCTGCAAATACATT 55381
>seq2510
Length=74850
Score = 152 bits (168), Expect = 6e-32
Identities = 141/179 (79%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 162334 GGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAG 162393
|| || ||||| || || || || || ||||| | || ||||| || |||||||||||
Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941
Query 162394 GATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCA 162453
|||||||||||||| || ||||||||||| ||||| || || || |||||| |||||||
Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881
Query 162454 TGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCC 162512
||| |||| | ||||| || ||||| ||| || ||||||||||||| ||||| ||
Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 56822
>seq124
Length=378598
Score = 107 bits (118), Expect = 2e-18
Identities = 169/237 (71%), Gaps = 4/237 (2%)
Strand=Plus/Plus
Query 160960 GATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGT 161019
|||||| | | |||||||||| ||||| | ||||| | ||| || ||||| ||
Sbjct 235667 GATGATGAGTTCATCCTTGACGCAGCTGAGAATGCAGGGATGGACCTGCCATACTCGTGC 235726
Query 161020 CGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGA-GAGTGGTACTGTAGATCAATC 161078
| ||||| |||||||| || || || || ||||| | ||| || || || ||||||||
Sbjct 235727 AGGGCTGGGGCTTGCTCAACATGCGCGGGGAAGATCGTTGAG-GGAACAGTGGATCAATC 235785
Query 161079 TGATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGC 161138
||| || ||||| ||||| || ||| | || || | ||| ||||| |||||| |
Sbjct 235786 TGACGGGTCATTCCTTGATGACGACCAAATGGAGAAGGGTTATGTGCTGACATGCGTTTC 235845
Query 161139 TTATCCCACTTCTGATGTAACTATTCTTGCCGAGCAAGAAGAGT-CTCTTTACTAAA 161194
||||| ||||| ||| |||| | || | |||| ||||| |||||||||||
Sbjct 235846 ATATCCAACTTCGGATTGTGTGATTCATACCCA-CAAGGAGAGTGATCTTTACTAAA 235901
>seq37
Length=530226
Score = 84.2 bits (92), Expect = 2e-11
Identities = 177/263 (67%), Gaps = 1/263 (0%)
Strand=Plus/Plus
Query 162143 AAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTT 162202
|||||||||| || ||||| || || ||| | | || |||| | || ||||
Sbjct 49822 AAGATGGTGATTGTGCTAATACATTTTGTGCGTTTAATCCAACCCAAGTTGGAGAAACTT 49881
Query 162203 ACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATA 162262
| || ||||| || || ||||| || ||||| || ||||| || || |||| ||||
Sbjct 49882 ATTCAATGGTCACCGCTAACCGCTT-TGGTCCCAAATCTTTGGGGTTTTTTTTTCCAATA 49940
Query 162263 AGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTA 162322
| ||||||| ||||| |||||| || || | || | ||| | |||| || ||
Sbjct 49941 AATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACCGGTTTATGGATGAGAGCTC 50000
Query 162323 TCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTC 162382
| | | || || ||| | || || || | || | ||| || || || || ||
Sbjct 50001 CTAGAGTAGTCGGTCTGGCTTTGAACCTACGCACCTATGGCTTCGTTTCCCAAGAAATCT 50060
Query 162383 GTGCAGCGGAGGATCCTGAATTT 162405
|||||||||| ||||||||||||
Sbjct 50061 GTGCAGCGGAAGATCCTGAATTT 50083
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 551184610498200
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