Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq752 331 1e-85 seq1263 282 5e-71 seq587 111 2e-19 seq37 107 2e-18 >seq752 Length=193215 Score = 331 bits (366), Expect = 1e-85 Identities = 488/685 (71%), Gaps = 7/685 (1%) Strand=Plus/Minus Query 190047 TTACTT---CTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACG 190103 |||||| || ||||| ||| ||| |||| | || |||||| |||| || || || Sbjct 189621 TTACTTANGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACC 189562 Query 190104 TTTGCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGG-TGCTAATTT 190162 |||| || ||||| || || ||| | || ||| || | || || ||| ||||| Sbjct 189561 TTTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTT 189503 Query 190163 TCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTG 190222 | || || || || || || ||||| || | | | ||||| | | |||| || Sbjct 189502 CTTAACCGCCGCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATG 189443 Query 190223 GGGTCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTT 190282 ||||||||| | ||||| ||||| | ||| |||| | || || || ||| | || Sbjct 189442 AGGTCCTGAAGCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTT 189383 Query 190283 TGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGC 190342 ||| || |||||||| |||||| ||||| || || ||| | ||||| ||||||| || Sbjct 189382 TGTTGCTCTCCACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGC 189323 Query 190343 ACG-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTT 190401 || ||| || | | || ||||| ||||| || || ||||||| ||| || ||||||| Sbjct 189322 TCGGTCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTT 189264 Query 190402 TTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCT 190461 ||||| || || || || || || || ||||| || |||||||||| ||||| | Sbjct 189263 TTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTT 189204 Query 190462 TCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGC 190521 | ||||| || || || || || ||| |||| || || || || || ||||| ||||| Sbjct 189203 TTGGTGTAGCGGCTATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACAT 189144 Query 190522 TGAACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAA 190581 ||||||| || || |||||||| ||||| ||| | |||| | || || || | || | Sbjct 189143 TGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTA 189084 Query 190582 TCCATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTA 190641 ||||||||| |||||||| |||||||| | |||||||||||| ||||| || || Sbjct 189083 TCCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCC 189024 Query 190642 AAGCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCT 190701 || || || | || |||| ||||| || ||||| |||||||| || ||||| || | Sbjct 189023 GTGCGTTTAACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTT 188964 Query 190702 GGTCTCAAATCTTTGGTGTTGCGTT 190726 |||| ||||||||||| ||||| || Sbjct 188963 GGTCCCAAATCTTTGGGGTTGCTTT 188939 >seq1263 Length=120960 Score = 282 bits (312), Expect = 5e-71 Identities = 413/579 (71%), Gaps = 4/579 (1%) Strand=Plus/Plus Query 190064 TGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGCTACAAGCTGGTACAC 190123 ||| ||| |||| | || |||||| |||| || || || |||| || ||||| || Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865 Query 190124 CCACGGACTCGCAAGTAGTTACCTTGAGGG-TGCTAATTTTCTTACAGCGGCTGTGTCAA 190182 || ||| | || ||| || | || || ||| ||||| | || || || || || | Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTTCGA 54924 Query 190183 CGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAAGGCG 190242 | ||||| || | | | ||||| | | |||| |||||||||||| | ||||| | Sbjct 54925 CTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGAG 54984 Query 190243 ATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTT 190302 |||| | ||| |||| | || || || ||| | ||||| || |||||||| |||| Sbjct 54985 ATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCTT 55044 Query 190303 TCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGT 190361 ||| ||||| || || ||| | ||||| |||||||| || || ||| || | | || Sbjct 55045 TCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCGA 55103 Query 190362 CCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATC 190421 ||||| ||||| || || ||||||| ||| || |||||||||||| || || || || Sbjct 55104 CCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATT 55163 Query 190422 TACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCAGCGATCTTC 190481 || || || ||||| || |||||||||| ||||| || ||||| || || || || Sbjct 55164 TATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTT 55223 Query 190482 CGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCCACATGATG 190541 || ||| |||| || || || || || ||||| ||||| ||||||| || || |||||| Sbjct 55224 CGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATG 55283 Query 190542 GGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGTGTGACTGTAGAG 190601 || ||||| ||| | |||| | || || || | || |||||||||| | |||||| Sbjct 55284 GGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGAA 55343 Query 190602 AATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTT 190640 |||||||| | |||||||||||| ||||| || ||| Sbjct 55344 AATACTTTATTTGAAGATGGTGATGCTGCAAATACATTT 55382 >seq587 Length=401750 Score = 111 bits (122), Expect = 2e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 189671 TCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTC 189730 ||||||| ||||| |||||||| ||||| ||||| ||||| ||||| | ||||| ||| Sbjct 44404 TCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTC 44463 Query 189731 AAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAG 189790 |||||||||| | || || | || || || | || | || | ||||||||||||| Sbjct 44464 AAGGTCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAG 44523 Query 189791 TCATGCATGAGCGTAACGCTCACAACTTCCC 189821 | |||||||| | ||| |||| ||||| || Sbjct 44524 TTATGCATGAACATAATACTCATAACTTTCC 44554 >seq37 Length=530226 Score = 107 bits (118), Expect = 2e-18 Identities = 204/296 (69%), Gaps = 6/296 (2%) Strand=Plus/Plus Query 190599 GAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGACTCTACA 190658 || |||| ||| | |||||||||||| || || || ||| || || | | || Sbjct 49806 GAAAATATTTTATTTGAAGATGGTGATTGTGCTAATACATTTTGTGCGTTTAATCCAACC 49865 Query 190659 CAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTTGGT 190718 |||| | ||| || ||||| |||||||| || ||||| || ||||| ||||||||||| Sbjct 49866 CAAGTTGGAGAAACTTATTCAATGGTCACCGCTAACCGCTT-TGGTCCCAAATCTTTGGG 49924 Query 190719 GTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGT 190778 ||| || ||||| | ||||| ||||| |||||| ||||| | || | ||| Sbjct 49925 GTTTTTTTTTCCAATAAATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACCGGT 49984 Query 190779 CTGTGGACTTCTTCCATCGGTATTA-TTGGTCTTGCTCTCAACCTTCGTGCTTATGACTT 190837 | |||| | | | | || | ||||| ||| | ||||| || | |||| ||| Sbjct 49985 TTATGGA-TGAGAGCTCCTAGAGTAGTCGGTCTGGCTTTGAACCTACGCACCTATGGCTT 50043 Query 190838 TGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACT---TTTTACA 190890 || |||||||| ||| | ||||| |||||||| || || ||| | ||||||| Sbjct 50044 CGTTTCCCAAGAAATCTGTGCAGCGGAAGATCCTGAATTTAAGATTGGATTTTACA 50099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633859902906000