Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_031906.1
Length=198190
Score E
Sequences producing significant alignments: (Bits) Value
seq752 331 1e-85
seq1263 282 5e-71
seq587 111 2e-19
seq37 107 2e-18
>seq752
Length=193215
Score = 331 bits (366), Expect = 1e-85
Identities = 488/685 (71%), Gaps = 7/685 (1%)
Strand=Plus/Minus
Query 190047 TTACTT---CTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACG 190103
|||||| || ||||| ||| ||| |||| | || |||||| |||| || || ||
Sbjct 189621 TTACTTANGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACC 189562
Query 190104 TTTGCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGG-TGCTAATTT 190162
|||| || ||||| || || ||| | || ||| || | || || ||| |||||
Sbjct 189561 TTTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTT 189503
Query 190163 TCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTG 190222
| || || || || || || ||||| || | | | ||||| | | |||| ||
Sbjct 189502 CTTAACCGCCGCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATG 189443
Query 190223 GGGTCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTT 190282
||||||||| | ||||| ||||| | ||| |||| | || || || ||| | ||
Sbjct 189442 AGGTCCTGAAGCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTT 189383
Query 190283 TGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGC 190342
||| || |||||||| |||||| ||||| || || ||| | ||||| ||||||| ||
Sbjct 189382 TGTTGCTCTCCACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGC 189323
Query 190343 ACG-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTT 190401
|| ||| || | | || ||||| ||||| || || ||||||| ||| || |||||||
Sbjct 189322 TCGGTCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTT 189264
Query 190402 TTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCT 190461
||||| || || || || || || || ||||| || |||||||||| ||||| |
Sbjct 189263 TTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTT 189204
Query 190462 TCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGC 190521
| ||||| || || || || || ||| |||| || || || || || ||||| |||||
Sbjct 189203 TTGGTGTAGCGGCTATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACAT 189144
Query 190522 TGAACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAA 190581
||||||| || || |||||||| ||||| ||| | |||| | || || || | || |
Sbjct 189143 TGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTA 189084
Query 190582 TCCATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTA 190641
||||||||| |||||||| |||||||| | |||||||||||| ||||| || ||
Sbjct 189083 TCCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCC 189024
Query 190642 AAGCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCT 190701
|| || || | || |||| ||||| || ||||| |||||||| || ||||| || |
Sbjct 189023 GTGCGTTTAACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTT 188964
Query 190702 GGTCTCAAATCTTTGGTGTTGCGTT 190726
|||| ||||||||||| ||||| ||
Sbjct 188963 GGTCCCAAATCTTTGGGGTTGCTTT 188939
>seq1263
Length=120960
Score = 282 bits (312), Expect = 5e-71
Identities = 413/579 (71%), Gaps = 4/579 (1%)
Strand=Plus/Plus
Query 190064 TGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGCTACAAGCTGGTACAC 190123
||| ||| |||| | || |||||| |||| || || || |||| || ||||| ||
Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865
Query 190124 CCACGGACTCGCAAGTAGTTACCTTGAGGG-TGCTAATTTTCTTACAGCGGCTGTGTCAA 190182
|| ||| | || ||| || | || || ||| ||||| | || || || || || |
Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTTCGA 54924
Query 190183 CGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAAGGCG 190242
| ||||| || | | | ||||| | | |||| |||||||||||| | ||||| |
Sbjct 54925 CTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGAG 54984
Query 190243 ATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTT 190302
|||| | ||| |||| | || || || ||| | ||||| || |||||||| ||||
Sbjct 54985 ATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCTT 55044
Query 190303 TCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGT 190361
||| ||||| || || ||| | ||||| |||||||| || || ||| || | | ||
Sbjct 55045 TCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCGA 55103
Query 190362 CCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATC 190421
||||| ||||| || || ||||||| ||| || |||||||||||| || || || ||
Sbjct 55104 CCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATT 55163
Query 190422 TACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCAGCGATCTTC 190481
|| || || ||||| || |||||||||| ||||| || ||||| || || || ||
Sbjct 55164 TATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTT 55223
Query 190482 CGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCCACATGATG 190541
|| ||| |||| || || || || || ||||| ||||| ||||||| || || ||||||
Sbjct 55224 CGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATG 55283
Query 190542 GGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGTGTGACTGTAGAG 190601
|| ||||| ||| | |||| | || || || | || |||||||||| | ||||||
Sbjct 55284 GGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGAA 55343
Query 190602 AATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTT 190640
|||||||| | |||||||||||| ||||| || |||
Sbjct 55344 AATACTTTATTTGAAGATGGTGATGCTGCAAATACATTT 55382
>seq587
Length=401750
Score = 111 bits (122), Expect = 2e-19
Identities = 115/151 (76%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 189671 TCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTC 189730
||||||| ||||| |||||||| ||||| ||||| ||||| ||||| | ||||| |||
Sbjct 44404 TCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTC 44463
Query 189731 AAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAG 189790
|||||||||| | || || | || || || | || | || | |||||||||||||
Sbjct 44464 AAGGTCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAG 44523
Query 189791 TCATGCATGAGCGTAACGCTCACAACTTCCC 189821
| |||||||| | ||| |||| ||||| ||
Sbjct 44524 TTATGCATGAACATAATACTCATAACTTTCC 44554
>seq37
Length=530226
Score = 107 bits (118), Expect = 2e-18
Identities = 204/296 (69%), Gaps = 6/296 (2%)
Strand=Plus/Plus
Query 190599 GAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGACTCTACA 190658
|| |||| ||| | |||||||||||| || || || ||| || || | | ||
Sbjct 49806 GAAAATATTTTATTTGAAGATGGTGATTGTGCTAATACATTTTGTGCGTTTAATCCAACC 49865
Query 190659 CAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTTGGT 190718
|||| | ||| || ||||| |||||||| || ||||| || ||||| |||||||||||
Sbjct 49866 CAAGTTGGAGAAACTTATTCAATGGTCACCGCTAACCGCTT-TGGTCCCAAATCTTTGGG 49924
Query 190719 GTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGT 190778
||| || ||||| | ||||| ||||| |||||| ||||| | || | |||
Sbjct 49925 GTTTTTTTTTCCAATAAATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACCGGT 49984
Query 190779 CTGTGGACTTCTTCCATCGGTATTA-TTGGTCTTGCTCTCAACCTTCGTGCTTATGACTT 190837
| |||| | | | | || | ||||| ||| | ||||| || | |||| |||
Sbjct 49985 TTATGGA-TGAGAGCTCCTAGAGTAGTCGGTCTGGCTTTGAACCTACGCACCTATGGCTT 50043
Query 190838 TGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACT---TTTTACA 190890
|| |||||||| ||| | ||||| |||||||| || || ||| | |||||||
Sbjct 50044 CGTTTCCCAAGAAATCTGTGCAGCGGAAGATCCTGAATTTAAGATTGGATTTTACA 50099
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633859902906000
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