Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq752 347 1e-90 seq1263 293 3e-74 seq2510 105 7e-18 seq587 105 7e-18 seq37 105 7e-18 seq1519 104 3e-17 seq2140 91.5 2e-13 >seq752 Length=193215 Score = 347 bits (384), Expect = 1e-90 Identities = 492/687 (72%), Gaps = 11/687 (2%) Strand=Plus/Minus Query 163947 TTACTT---CTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGTACAACG 164003 |||||| || ||||| ||| ||| | || | || |||||| |||| |||||||| Sbjct 189621 TTACTTANGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACC 189562 Query 164004 TTTGTTACCAGTTGGTACACCCACGGTCTCGCGTCTAGTTACC--TTG--AGGGTGCTAA 164059 ||||| || ||||| || || || | || ||||| | ||| ||| ||| || Sbjct 189561 TTTGTAACTTCATGGTATACTCATGGATTGGC---TAGTTCCTATTTGGAAGGATGC-AA 189506 Query 164060 TTTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACT 164119 |||| | || || || || || || ||||| || | | | ||||| | | |||| Sbjct 189505 TTTCTTAACCGCCGCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACT 189446 Query 164120 TTGGGGTCCTGAGTCTCAGGGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGC 164179 || |||||||| | || || || || | | | ||||||||| | || || || ||| | Sbjct 189445 ATGAGGTCCTGAAGCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGAC 189386 Query 164180 TTTTGTGGCGTTCCACGGATCTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAAT 164239 ||||| || ||||||| |||||| || || ||||| ||| | || || ||||| | Sbjct 189385 GTTTGTTGCTCTCCACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACT 189326 Query 164240 TGCACGTCTTGTAGGTATCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGT 164299 ||| || ||| | || || || ||||| || || ||||||| ||| |||||||| Sbjct 189325 TGCTCGGTCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGT 189266 Query 164300 CTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTC 164359 ||||| || ||||| || || || || || || ||| ||||||||||||| ||| Sbjct 189265 TTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAG 189206 Query 164360 GTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGAC 164419 ||||| || ||||| || || ||||| || | || ||||||| || ||||| ||||| Sbjct 189205 TTTTGGTGTAGCGGCTATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGAC 189146 Query 164420 ACTCAACCCCTTCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGC 164479 | | ||||| || ||||||||||| ||||| || | | || | ||||| || || || Sbjct 189145 ATTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGC 189086 Query 164480 TATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTT 164539 ||| ||||||||||| ||||| |||||||| |||||||||||||| ||||||| || Sbjct 189085 TATCCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATT 189026 Query 164540 CAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTT 164599 | || || | || || |||| ||||| ||||| || |||||||| || |||||||| Sbjct 189025 CCGTGCGTTTAACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTT 188966 Query 164600 CTGGTCTCAGATTTTTGGTATTGCTTT 164626 ||||| || || ||||| ||||||| Sbjct 188965 TTGGTCCCAAATCTTTGGGGTTGCTTT 188939 >seq1263 Length=120960 Score = 293 bits (324), Expect = 3e-74 Identities = 406/565 (72%), Gaps = 8/565 (1%) Strand=Plus/Plus Query 163964 TGCTTATCTTGCAATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGGTACAC 164023 ||| ||| | || | || |||||| |||| |||||||| ||||| || ||||| || Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865 Query 164024 CCACGGTCTCGCGTCTAGTTACC--TTG--AGGGTGCTAATTTCCTTACAGCGGCTGTGT 164079 || || | || ||||| | ||| ||| ||| |||||| | || || || || | Sbjct 54866 TCATGGATTGGC---TAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTT 54921 Query 164080 CAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGG 164139 | || ||||| || | | | ||||| | | |||| ||||||||||| | || | Sbjct 54922 CGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAG 54981 Query 164140 GGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGAT 164199 | || || | | | ||||||||| | || || || ||| | ||||| || ||||||| Sbjct 54982 GAGATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCG 55041 Query 164200 CTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCC 164259 |||||| || || ||||| ||| | || || |||||| |||| || ||| | | Sbjct 55042 CTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATTGC 55101 Query 164260 GTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTA 164319 | || || ||||| || || ||||||| ||| |||||||| ||||| || ||||| | Sbjct 55102 GACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGA 55161 Query 164320 TGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCT 164379 | || || || || || ||| ||||||||||||| ||| ||||| || ||||| || | Sbjct 55162 TTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATAT 55221 Query 164380 TCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGA 164439 | ||||| || | || ||||||| || ||||| |||||| | ||||| || ||||||| Sbjct 55222 TTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGA 55281 Query 164440 TGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAG 164499 |||| ||||| || | | || | ||||| || || ||||| |||||||||| |||| Sbjct 55282 TGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAG 55341 Query 164500 AGAATACTTTGTTTGAAGATGGTGA 164524 | |||||||| |||||||||||||| Sbjct 55342 AAAATACTTTATTTGAAGATGGTGA 55366 >seq2510 Length=74850 Score = 105 bits (116), Expect = 7e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 164704 TCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCAGCAG 164763 ||||||| || || || || || || ||||| || | || ||||| || | ||||| | Sbjct 57002 TCGGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGG 56943 Query 164764 AGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAAGGACTCCGTG 164823 | ||||||||||||||||| ||||| || || || || || | || ||||| | |||| Sbjct 56942 AAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTG 56883 Query 164824 CCTGGATGGCTCCAGTAGACCAGCCACACGAATCGTTTGTATTTCCAGAGGAAGTTCTTC 164883 | |||||||| | ||| ||||| || ||| || |||| || ||||| ||||| | Sbjct 56882 CTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTAC 56823 Query 164884 C 164884 | Sbjct 56822 C 56822 >seq587 Length=401750 Score = 105 bits (116), Expect = 7e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 161396 CACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGG 161455 ||| ||||| |||||||| || || ||||| |||||||| || | | ||| |||| || Sbjct 44408 CACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGG 44467 Query 161456 CAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAAT 161515 || | || || | ||||| || | |||| || |||||||||||||||||| || Sbjct 44468 TCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAGTTAT 44527 Query 161516 GCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTCGCTGCT 161558 ||| || | |||| |||| ||||| || |||| || |||||| Sbjct 44528 GCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570 >seq37 Length=530226 Score = 105 bits (116), Expect = 7e-18 Identities = 194/283 (69%), Gaps = 1/283 (0%) Strand=Plus/Plus Query 164499 GAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACT 164558 || |||| ||| |||||||||||||| | ||||| || || || | || || Sbjct 49806 GAAAATATTTTATTTGAAGATGGTGATTGTGCTAATACATTTTGTGCGTTTAATCCAACC 49865 Query 164559 CAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGT 164618 |||| | ||| ||||| || |||||||| || |||||||| ||||| || || ||||| Sbjct 49866 CAAGTTGGAGAAACTTATTCAATGGTCACCGCTAACCGCTT-TGGTCCCAAATCTTTGGG 49924 Query 164619 ATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGA 164678 || ||| |||||| ||||||| || || |||||| ||||| | || | || Sbjct 49925 GTTTTTTTTTCCAATAAATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACCGGT 49984 Query 164679 CTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTT 164738 | |||| || || | | | ||||||| || | || || || | |||| || Sbjct 49985 TTATGGATGAGAGCTCCTAGAGTAGTCGGTCTGGCTTTGAACCTACGCACCTATGGCTTC 50044 Query 164739 GTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGA 164781 || || || || || | ||||| || |||||||||||| ||| Sbjct 50045 GTTTCCCAAGAAATCTGTGCAGCGGAAGATCCTGAATTTAAGA 50087 >seq1519 Length=169030 Score = 104 bits (114), Expect = 3e-17 Identities = 114/149 (77%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 160935 GGCATGCGCCCCTGGATCTGC-GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGT 160993 || ||| ||| |||||| ||| ||||||||||| || ||||||| ||||| | || || Sbjct 82769 GGTATGTGCCGCTGGAT-TGCTGTTGCATATTCAGCTTCTGTTGCAGCTGCTACCGCCGT 82711 Query 160994 ATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTC 161053 ||| | ||||||| | ||||| || ||| |||||||||||||| | || ||||| Sbjct 82710 TTTCATGATCTATCCAATTGGTCATGGGAGTTTTTCTGATGGTATGCCTTTAGGAATCTC 82651 Query 161054 TGGTACCTTCAACTTCATGCTTGTCTTCC 161082 | |||| |||||||| ||| || | |||| Sbjct 82650 TAGTACTTTCAACTTTATGATTATATTCC 82622 >seq2140 Length=74954 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 161474 GGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCA 161533 |||||| || | ||||||| |||||||||||||||||| ||||| || |||||||||| Sbjct 15941 GGCTGATATTATTAATCGTGGTAACCTTGGTATGGAAGTTATGCATGAATGTAATGCTCA 16000 Query 161534 CAACTTCCCTCTGGATCTCGCTGCT 161558 |||||||| || || || |||||| Sbjct 16001 TAACTTCCCCCTAGACCTAGCTGCT 16025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559133850259600