Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq889 152 8e-35 >seq889 Length=1069354 Score = 152 bits (168), Expect = 8e-35 Identities = 138/169 (82%), Gaps = 5/169 (3%) Strand=Plus/Minus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 ||||||||||| |||| || |||| | || |||||||||| |||||||||||||| || Sbjct 298427 TACAAAGGGCAAGGACATAATCAAAGTGAT-TTGATGACTCATGCTTACTAGGAATT-CC 298370 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTAC 121 |||||||||| || |||| ||||||||||| |||| |||| ||||||||||||||||| Sbjct 298369 TCGTTGAAGAACATTAATTATAATGATCTATCTCCATTACGAAGAAATTTCAAAGATTAC 298310 Query 122 CCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGC 170 ||||| ||||| |||||| | |||| || ||||||| |||||| Sbjct 298309 TCGGACGTGTCGATTAAGGTG-TGAACTCATT--TTACATCAATGTAGC 298264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751983688885