Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq892 102 2e-19 seq980 100 9e-19 >seq892 Length=1410631 Score = 102 bits (112), Expect = 2e-19 Identities = 81/96 (84%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 271 GCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTT 330 |||||||| || ||||||||||||| ||| | |||||| ||||||||||||||||| | Sbjct 674542 GCCGGTGATAAGCCGGAGGAAGGTGAGGATG-CGTCAAGTCATCATGCCCCTTATGCCCT 674600 Query 331 GGGCTACACACGTGCTACAATGGACAATACAAAGGG 366 |||| |||||| ||||||||||| | |||||||| Sbjct 674601 GGGCGACACACATGCTACAATGGCCGGGACAAAGGG 674636 >seq980 Length=1630315 Score = 100 bits (110), Expect = 9e-19 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 195 TGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGG 254 |||||||||||||||||||||||||||||| || | |||||||||| | ||||||| | Sbjct 1150761 TGTTGGGTTAAGTCCCGCAACGAGCGCAACACTCGTGTTTAGTTGCCACCGTTAAGTTTG 1150702 Query 255 GCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAG 292 | || || | ||||||| |||| || |||||||||| Sbjct 1150701 GAACCCTGAACAGACTGCCAGTGATAAGCCGGAGGAAG 1150664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503966325440