Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq892 102 2e-19
seq980 100 9e-19
>seq892
Length=1410631
Score = 102 bits (112), Expect = 2e-19
Identities = 81/96 (84%), Gaps = 1/96 (1%)
Strand=Plus/Plus
Query 271 GCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTT 330
|||||||| || ||||||||||||| ||| | |||||| ||||||||||||||||| |
Sbjct 674542 GCCGGTGATAAGCCGGAGGAAGGTGAGGATG-CGTCAAGTCATCATGCCCCTTATGCCCT 674600
Query 331 GGGCTACACACGTGCTACAATGGACAATACAAAGGG 366
|||| |||||| ||||||||||| | ||||||||
Sbjct 674601 GGGCGACACACATGCTACAATGGCCGGGACAAAGGG 674636
>seq980
Length=1630315
Score = 100 bits (110), Expect = 9e-19
Identities = 81/98 (83%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 195 TGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGG 254
|||||||||||||||||||||||||||||| || | |||||||||| | ||||||| |
Sbjct 1150761 TGTTGGGTTAAGTCCCGCAACGAGCGCAACACTCGTGTTTAGTTGCCACCGTTAAGTTTG 1150702
Query 255 GCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAG 292
| || || | ||||||| |||| || ||||||||||
Sbjct 1150701 GAACCCTGAACAGACTGCCAGTGATAAGCCGGAGGAAG 1150664
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1503966325440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |