Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq395 98.7 4e-18 >seq395 Length=3405 Score = 98.7 bits (108), Expect = 4e-18 Identities = 89/111 (80%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||| ||||||||||||||| | | ||| || |||| |||||| Sbjct 3296 GCTGCGCCTCAACGCATTTTGGGGAGAACCAGCTAGCTCTG-GTTCGAGTGGCATTTCAC 3354 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCT 247 ||||| ||||| |||||| || | |||||||| | ||| ||||||| ||| Sbjct 3355 CCCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCT 3405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817559303936