Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq889 107 4e-21 >seq889 Length=1069354 Score = 107 bits (118), Expect = 4e-21 Identities = 116/151 (77%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 178 AACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGG 237 || ||||||| |||||| || | ||| | |||||||| || ||| |||| ||| Sbjct 298279 AATGAGTTCA-CACCTTAATCGACACGTCCGAGTAATCTTTGAAATTTCT-TCGTAATGG 298336 Query 238 GGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCA 297 |||||| |||| ||||| || ||||||||||||||| |||||||||| | ||||||| Sbjct 298337 AGATAGATCATTATAATTAATGTTCTTCAACGAGGAATTCCTAGTAAGCATGAGTCATCA 298396 Query 298 GCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | ||||||| |||| ||||||||||| Sbjct 298397 AATCACTTTGATTATGTCCTTGCCCTTTGTA 298427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947178792192