Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1303 156 1e-35 >seq1303 Length=98828 Score = 156 bits (172), Expect = 1e-35 Identities = 111/126 (88%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 380 GTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTG 439 |||||| | ||| |||||| |||| ||||||||||||| ||||||||||||||||||| | Sbjct 52822 GTAGTA-GTTACCATCAAACAAACTATAACTGATTTAAWGAGCCATTCGCAGTTTCACAG 52880 Query 440 TATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTAC 498 | | || || ||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 52881 TCTGAWTTCGTTCATACTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTAC 52940 Query 499 TGGCAG 504 |||||| Sbjct 52941 TGGCAG 52946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510366182144