Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq415 147 2e-30
seq1432 140 3e-28
>seq415
Length=609146
Score = 147 bits (162), Expect = 2e-30
Identities = 202/281 (72%), Gaps = 5/281 (2%)
Strand=Plus/Minus
Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155
||||||||||| || ||||| || |||||||| | || || || ||| | || |||||
Sbjct 101134 ATGTACAAAAAAGCCGAAGCATCATTCTGGACCGCTGAAGAAGTAGATCTATCACAAGAC 101075
Query 61156 ATGAATGACTGGGAGCGT----TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTT 61211
| |||||||| | | ||| |||||||| || ||||| |||||||| |
Sbjct 101074 AACCGCGACTGGGAAAACAATCTCAACGA-CGGTGAACGTCACTTCATCAAACATGTCCT 101016
Query 61212 GGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCA 61271
|| ||||| ||||| || ||||| ||||| |||||| | || ||| |
Sbjct 101015 CGCTTTCTTCGCCGCATCCGACGGAATCGTATTAGAGAATCTCGCTTCTCGATTCATGTC 100956
Query 61272 GGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331
|| || ||||| |||||||||||| ||||||||| |||||||| || || || || |
Sbjct 100955 CGATGTTCAAGTCTCGGAGGCGCGTGCTTTCTACGGTTTCCAGATCGCGATTGAAAACAT 100896
Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372
||| ||||||||||| ||| | || |||||||||| ||||
Sbjct 100895 CCATTCGGAGATGTATAGTCTCCTTCTCGATACGTATATCA 100855
>seq1432
Length=495105
Score = 140 bits (154), Expect = 3e-28
Identities = 365/553 (66%), Gaps = 8/553 (1%)
Strand=Plus/Plus
Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155
|||||||| || || ||||| ||||||||||| | || || |||||| | || |||||
Sbjct 65529 ATGTACAAGAAAGCCGAAGCGTCCTTCTGGACCGCCGAAGAAGTCGATCTCTCTCAAGAC 65588
Query 61156 ATGAATGACTGGGAGCGTT---TATCGAGCGGTGAACAACATTTCATTAAACATGTGTTG 61212
| |||||||| | || | | || |||| || ||||| ||||| || |
Sbjct 65589 AATCGCGACTGGGAAAACTCACTAACCAACGACGAACGTCACTTCATCAAACACGTCCTC 65648
Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272
|| ||||| ||||| || ||||| ||||| |||||| | | ||| ||| |
Sbjct 65649 GCCTTCTTCGCCGCATCAGACGGAATCGTTCTCGAGAATCTCTCAACACGATTCATGTCC 65708
Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332
|| || || || || || || ||| |||||||| ||||| || || || |||||| |
Sbjct 65709 GATGTTCAGGTCTCAGAAGCTCGTGCCTTCTACGGATTCCAAATCGCAATCGAGAATATT 65768
Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAA 61392
|| || |||||||| ||| | || |||| || ||||||| || || | ||
Sbjct 65769 CATTCTGAGATGTATAGTCTCCTTCTCGACACTTACATCAAAGACAACAAAGAGAGAGAT 65828
Query 61393 CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTC 61452
| | || || ||||| || || || |||| | |||||| || ||||| |
Sbjct 65829 CATCTCTTTCGCGCAATCGAAACAATTCCTTGTGTGACGAAGAAAGCAGAATGGGCAATG 65888
Query 61453 AATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTC 61512
|| ||||||| | | | | | || | ||| || | | || ||||| ||
Sbjct 65889 AAATGGATCAACGG---ATCTCAAAGCTTCGCTGAGAGAATCGTAGCTTTTGCTTGCGTT 65945
Query 61513 GAGGGTGTATTTTTCAGTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571
|| ||| |||| ||| ||| | | |||| | || || |||||||||||||| || |
Sbjct 65946 GAAGGTATATTCTTCTCTGGTAGCTTTTG-TTCGATATTCTGGTTGAAGAAACGAGGTTT 66004
Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631
||||| || || || ||| || || ||||| || | ||||| || | || |||||
Sbjct 66005 AATGCCTGGACTCACATTCTCTAACGAATTGATTTCGAGAGACGAAGGTCTTCACTGTGA 66064
Query 61632 TTTTGCTGTTTTG 61644
||| ||| ||||
Sbjct 66065 TTTCGCTTGTTTG 66077
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397557151238960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |