Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq415 147 2e-30 seq1432 140 3e-28 >seq415 Length=609146 Score = 147 bits (162), Expect = 2e-30 Identities = 202/281 (72%), Gaps = 5/281 (2%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 ||||||||||| || ||||| || |||||||| | || || || ||| | || ||||| Sbjct 101134 ATGTACAAAAAAGCCGAAGCATCATTCTGGACCGCTGAAGAAGTAGATCTATCACAAGAC 101075 Query 61156 ATGAATGACTGGGAGCGT----TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTT 61211 | |||||||| | | ||| |||||||| || ||||| |||||||| | Sbjct 101074 AACCGCGACTGGGAAAACAATCTCAACGA-CGGTGAACGTCACTTCATCAAACATGTCCT 101016 Query 61212 GGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCA 61271 || ||||| ||||| || ||||| ||||| |||||| | || ||| | Sbjct 101015 CGCTTTCTTCGCCGCATCCGACGGAATCGTATTAGAGAATCTCGCTTCTCGATTCATGTC 100956 Query 61272 GGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331 || || ||||| |||||||||||| ||||||||| |||||||| || || || || | Sbjct 100955 CGATGTTCAAGTCTCGGAGGCGCGTGCTTTCTACGGTTTCCAGATCGCGATTGAAAACAT 100896 Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 ||| ||||||||||| ||| | || |||||||||| |||| Sbjct 100895 CCATTCGGAGATGTATAGTCTCCTTCTCGATACGTATATCA 100855 >seq1432 Length=495105 Score = 140 bits (154), Expect = 3e-28 Identities = 365/553 (66%), Gaps = 8/553 (1%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| ||||||||||| | || || |||||| | || ||||| Sbjct 65529 ATGTACAAGAAAGCCGAAGCGTCCTTCTGGACCGCCGAAGAAGTCGATCTCTCTCAAGAC 65588 Query 61156 ATGAATGACTGGGAGCGTT---TATCGAGCGGTGAACAACATTTCATTAAACATGTGTTG 61212 | |||||||| | || | | || |||| || ||||| ||||| || | Sbjct 65589 AATCGCGACTGGGAAAACTCACTAACCAACGACGAACGTCACTTCATCAAACACGTCCTC 65648 Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272 || ||||| ||||| || ||||| ||||| |||||| | | ||| ||| | Sbjct 65649 GCCTTCTTCGCCGCATCAGACGGAATCGTTCTCGAGAATCTCTCAACACGATTCATGTCC 65708 Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332 || || || || || || || ||| |||||||| ||||| || || || |||||| | Sbjct 65709 GATGTTCAGGTCTCAGAAGCTCGTGCCTTCTACGGATTCCAAATCGCAATCGAGAATATT 65768 Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAA 61392 || || |||||||| ||| | || |||| || ||||||| || || | || Sbjct 65769 CATTCTGAGATGTATAGTCTCCTTCTCGACACTTACATCAAAGACAACAAAGAGAGAGAT 65828 Query 61393 CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTC 61452 | | || || ||||| || || || |||| | |||||| || ||||| | Sbjct 65829 CATCTCTTTCGCGCAATCGAAACAATTCCTTGTGTGACGAAGAAAGCAGAATGGGCAATG 65888 Query 61453 AATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTC 61512 || ||||||| | | | | | || | ||| || | | || ||||| || Sbjct 65889 AAATGGATCAACGG---ATCTCAAAGCTTCGCTGAGAGAATCGTAGCTTTTGCTTGCGTT 65945 Query 61513 GAGGGTGTATTTTTCAGTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 || ||| |||| ||| ||| | | |||| | || || |||||||||||||| || | Sbjct 65946 GAAGGTATATTCTTCTCTGGTAGCTTTTG-TTCGATATTCTGGTTGAAGAAACGAGGTTT 66004 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631 ||||| || || || ||| || || ||||| || | ||||| || | || ||||| Sbjct 66005 AATGCCTGGACTCACATTCTCTAACGAATTGATTTCGAGAGACGAAGGTCTTCACTGTGA 66064 Query 61632 TTTTGCTGTTTTG 61644 ||| ||| |||| Sbjct 66065 TTTCGCTTGTTTG 66077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397557151238960