Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq1127 127 2e-24 seq1027 82.4 8e-11 >seq1127 Length=645582 Score = 127 bits (140), Expect = 2e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 160969 TATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGT 161028 || || |||||||| || || ||||| || | || || ||||| || ||||||||| Sbjct 574033 TACGTTCTTGACGCGGCCGAGGAAGCTGGAATCGATTTGCCATACTCTTGCCGTGCTGGT 573974 Query 161029 GCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCT 161088 |||| || | ||||||||||| ||| | ||| |||| ||||| ||||| ||| | Sbjct 573973 TCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGATCAGTCTGACCAAAGT 573914 Query 161089 TTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACT 161148 ||||| |||||||| || ||| ||| ||||| || || || | ||||||||| ||| Sbjct 573913 TTCCTTGATGATGAACAGATTGGTGAAGGGTTTGTTCTCACTTGTGCTGCTTATCCTACT 573854 Query 161149 TCTGATGTAACTATT 161163 |||||||| || ||| Sbjct 573853 TCTGATGTTACCATT 573839 >seq1027 Length=9901 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 160954 TGTGAGGATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTAC 161013 ||||| || ||| || ||||| ||||||||||| ||||| || | ||| || ||| Sbjct 6562 TGTGAAGAAGATGTCTACGTCCTCGACGCTGCTGAGGAAGCCGGAATCGACTTGCCGTAC 6621 Query 161014 TCCTGTCGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGAT 161073 || || ||||| ||| ||||||| | ||| || || || | | ||| | | || Sbjct 6622 TCATGCCGTGCCGGTTCTTGCTCAAGTTGCGCCGGGAAAGTCGTCTCTGGCTCCATTGAC 6681 Query 161074 CAATCTGATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGC 161133 || || || || ||| | || ||||| || | ||| | |||| ||||||| Sbjct 6682 CAGTCGGAACAGAGCTTCTTAGACGATGACCAGATGAGCGAAGGCTATGTCTTGACCTGT 6741 Query 161134 GTTGCTTATCCCACTTCTGATGT 161156 || |||||||| ||||||||||| Sbjct 6742 GTGGCTTATCCGACTTCTGATGT 6764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551360568364200