Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_031903.1
Length=172345
Score E
Sequences producing significant alignments: (Bits) Value
seq1127 127 2e-24
seq1027 82.4 8e-11
>seq1127
Length=645582
Score = 127 bits (140), Expect = 2e-24
Identities = 145/195 (74%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 160969 TATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGT 161028
|| || |||||||| || || ||||| || | || || ||||| || |||||||||
Sbjct 574033 TACGTTCTTGACGCGGCCGAGGAAGCTGGAATCGATTTGCCATACTCTTGCCGTGCTGGT 573974
Query 161029 GCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCT 161088
|||| || | ||||||||||| ||| | ||| |||| ||||| ||||| ||| |
Sbjct 573973 TCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGATCAGTCTGACCAAAGT 573914
Query 161089 TTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACT 161148
||||| |||||||| || ||| ||| ||||| || || || | ||||||||| |||
Sbjct 573913 TTCCTTGATGATGAACAGATTGGTGAAGGGTTTGTTCTCACTTGTGCTGCTTATCCTACT 573854
Query 161149 TCTGATGTAACTATT 161163
|||||||| || |||
Sbjct 573853 TCTGATGTTACCATT 573839
>seq1027
Length=9901
Score = 82.4 bits (90), Expect = 8e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 160954 TGTGAGGATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTAC 161013
||||| || ||| || ||||| ||||||||||| ||||| || | ||| || |||
Sbjct 6562 TGTGAAGAAGATGTCTACGTCCTCGACGCTGCTGAGGAAGCCGGAATCGACTTGCCGTAC 6621
Query 161014 TCCTGTCGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGAT 161073
|| || ||||| ||| ||||||| | ||| || || || | | ||| | | ||
Sbjct 6622 TCATGCCGTGCCGGTTCTTGCTCAAGTTGCGCCGGGAAAGTCGTCTCTGGCTCCATTGAC 6681
Query 161074 CAATCTGATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGC 161133
|| || || || ||| | || ||||| || | ||| | |||| |||||||
Sbjct 6682 CAGTCGGAACAGAGCTTCTTAGACGATGACCAGATGAGCGAAGGCTATGTCTTGACCTGT 6741
Query 161134 GTTGCTTATCCCACTTCTGATGT 161156
|| |||||||| |||||||||||
Sbjct 6742 GTGGCTTATCCGACTTCTGATGT 6764
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 551360568364200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |