Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= AAMG01000140.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
seq696 80.6 5e-13
seq9 80.6 5e-13
>seq696
Length=154923
Score = 80.6 bits (88), Expect = 5e-13
Identities = 208/310 (67%), Gaps = 9/310 (3%)
Strand=Plus/Plus
Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71
|||| |||||||||| | |||| ||| || ||||| || |||| ||| | |
Sbjct 105480 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAG--GAGCCCTGGGC 105537
Query 72 T--GACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129
| ||| |||||||| ||| | |||||||| ||| | | | | || || |||||||
Sbjct 105538 TCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAG 105596
Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189
|| | ||| ||||| || ||||||||| ||| | ||||| | || ||
Sbjct 105597 GGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTT 105652
Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249
| ||| |||| | |||||||| | | || |||| ||||| ||| | | ||
Sbjct 105653 ATGGACCCGAACCTGGGTGATCTATCTATGACCAGGATGAAGCTTGGGTGAAACTAAGTG 105712
Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309
|||| |||||||| | |||||||| | ||||||| | | || ||||||||||| |
Sbjct 105713 GAGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATG 105772
Query 310 CCAATCAAAC 319
||| || |||
Sbjct 105773 CCACTCGAAC 105782
Score = 80.6 bits (88), Expect = 5e-13
Identities = 208/310 (67%), Gaps = 9/310 (3%)
Strand=Plus/Minus
Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71
|||| |||||||||| | |||| ||| || ||||| || |||| ||| | |
Sbjct 133916 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAG--GAGCCCTGGGC 133859
Query 72 T--GACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129
| ||| |||||||| ||| | |||||||| ||| | | | | || || |||||||
Sbjct 133858 TCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAG 133800
Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189
|| | ||| ||||| || ||||||||| ||| | ||||| | || ||
Sbjct 133799 GGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTT 133744
Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249
| ||| |||| | |||||||| | | || |||| ||||| ||| | | ||
Sbjct 133743 ATGGACCCGAACCTGGGTGATCTATCTATGACCAGGATGAAGCTTGGGTGAAACTAAGTG 133684
Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309
|||| |||||||| | |||||||| | ||||||| | | || ||||||||||| |
Sbjct 133683 GAGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATG 133624
Query 310 CCAATCAAAC 319
||| || |||
Sbjct 133623 CCACTCGAAC 133614
>seq9
Length=1906741
Score = 80.6 bits (88), Expect = 5e-13
Identities = 208/310 (67%), Gaps = 9/310 (3%)
Strand=Plus/Minus
Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71
|||| |||||||||| | |||| ||| || ||||| || |||| ||| | |
Sbjct 1654749 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAG--GAGCCCTGGGC 1654692
Query 72 T--GACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129
| ||| |||||||| ||| | |||||||| ||| | | | | || || |||||||
Sbjct 1654691 TCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAG 1654633
Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189
|| | ||| ||||| || ||||||||| ||| | ||||| | || ||
Sbjct 1654632 GGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTT 1654577
Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249
| ||| |||| | |||||||| | | || |||| ||||| ||| | | ||
Sbjct 1654576 ATGGACCCGAACCTGGGTGATCTATCTATGACCAGGATGAAGCTTGGGTGAAACTAAGTG 1654517
Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309
|||| |||||||| | |||||||| | ||||||| | | || ||||||||||| |
Sbjct 1654516 GAGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATG 1654457
Query 310 CCAATCAAAC 319
||| || |||
Sbjct 1654456 CCACTCGAAC 1654447
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 972793229312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |