Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq3 120 2e-25
>seq3
Length=24464547
Score = 120 bits (132), Expect = 2e-25
Identities = 99/118 (84%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59
||||||||| ||||||||||||| ||||||||| ||| ||||| | |||||| |
Sbjct 24322604 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTATAAGCAACATCCGC 24322662
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 24322663 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 24322720
Score = 120 bits (132), Expect = 2e-25
Identities = 99/118 (84%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59
||||||||| ||||||||||||| ||||||||| ||| ||||| | |||||| |
Sbjct 24331997 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTATAAGCAACATCCGC 24332055
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 24332056 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 24332113
Score = 120 bits (132), Expect = 2e-25
Identities = 99/118 (84%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59
||||||||| ||||||||||||| ||||||||| ||| ||||| | |||||| |
Sbjct 24352104 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTATAAGCAACATCCGC 24352162
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 24352163 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 24352220
Score = 120 bits (132), Expect = 2e-25
Identities = 99/118 (84%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59
||||||||| ||||||||||||| ||||||||| ||| ||||| | |||||| |
Sbjct 24368259 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTATAAGCAACATCCGC 24368317
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 24368318 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 24368375
Score = 120 bits (132), Expect = 2e-25
Identities = 99/118 (84%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59
||||||||| ||||||||||||| ||||||||| ||| ||||| | |||||| |
Sbjct 24377666 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTATAAGCAACATCCGC 24377724
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 24377725 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 24377782
Score = 120 bits (132), Expect = 2e-25
Identities = 99/118 (84%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
||||||||| ||||||||||||| ||||||||| |||| |||| | |||||| |
Sbjct 24386352 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTATAAGCAACATCCGC 24386294
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 24386293 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 24386236
Score = 120 bits (132), Expect = 2e-25
Identities = 99/118 (84%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
||||||||| ||||||||||||| ||||||||| |||| |||| | |||||| |
Sbjct 24395813 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTATAAGCAACATCCGC 24395755
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 24395754 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 24395697
Score = 120 bits (132), Expect = 2e-25
Identities = 99/118 (84%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
||||||||| ||||||||||||| ||||||||| |||| |||| | |||||| |
Sbjct 24406723 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTATAAGCAACATCCGC 24406665
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 24406664 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 24406607
Score = 120 bits (132), Expect = 2e-25
Identities = 99/118 (84%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
||||||||| ||||||||||||| ||||||||| |||| |||| | |||||| |
Sbjct 24415561 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTATAAGCAACATCCGC 24415503
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 24415502 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 24415445
Score = 120 bits (132), Expect = 2e-25
Identities = 99/118 (84%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
||||||||| ||||||||||||| ||||||||| |||| |||| | |||||| |
Sbjct 24425301 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTATAAGCAACATCCGC 24425243
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 24425242 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 24425185
Score = 120 bits (132), Expect = 2e-25
Identities = 99/118 (84%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
||||||||| ||||||||||||| ||||||||| |||| |||| | |||||| |
Sbjct 24435296 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTATAAGCAACATCCGC 24435238
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 24435237 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 24435180
Score = 113 bits (124), Expect = 3e-23
Identities = 98/118 (83%), Gaps = 3/118 (3%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
||||||||| |||| |||||||| ||||||||| |||| |||| | |||||| |
Sbjct 24341476 GAACCCAAAAACTT-GATTTCTCATAAGGTGCC-AGCGGAGTCCTATAAGCAACATCCGC 24341533
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 24341534 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 24341591
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278398183440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |