Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq696 230 6e-58 seq2 223 9e-56 seq13 89.7 1e-15 >seq696 Length=154923 Score = 230 bits (254), Expect = 6e-58 Identities = 297/409 (73%), Gaps = 2/409 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| ||| Sbjct 101730 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 101789 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | |||| | | || Sbjct 101790 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 101849 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||| | || |||| | || Sbjct 101850 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTTGAGTACGGTAGG 101909 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| |||||||||||||| || | | ||||||||| || Sbjct 101910 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 101969 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| |||||||| || | |||||||| ||||||| || | Sbjct 101970 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGG 102029 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 |||||||||||| ||||||| ||| |||||||| ||||| | || | | | Sbjct 102030 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 102089 Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || || ||||||||||||| |||| ||||||||||| ||| Sbjct 102090 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 102138 Score = 230 bits (254), Expect = 6e-58 Identities = 297/409 (73%), Gaps = 2/409 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| ||| Sbjct 137666 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 137607 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | |||| | | || Sbjct 137606 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 137547 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||| | || |||| | || Sbjct 137546 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTTGAGTACGGTAGG 137487 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| |||||||||||||| || | | ||||||||| || Sbjct 137486 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 137427 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| |||||||| || | |||||||| ||||||| || | Sbjct 137426 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGG 137367 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 |||||||||||| ||||||| ||| |||||||| ||||| | || | | | Sbjct 137366 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 137307 Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || || ||||||||||||| |||| ||||||||||| ||| Sbjct 137306 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 137258 >seq2 Length=19320864 Score = 223 bits (246), Expect = 9e-56 Identities = 296/409 (72%), Gaps = 3/409 (1%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| ||| Sbjct 9202714 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 9202773 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||| | | ||| || | | |||| | | || Sbjct 9202774 AAGCGTTATCCGGAATGATTGGGCGTAAAGC-TCTGTAGGTGGCTTTTTAAGTCCGCCGT 9202832 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||| | || |||| | || Sbjct 9202833 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTTGAGTACGGTAGG 9202892 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| |||||||||||||| || | | ||||||||| || Sbjct 9202893 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 9202952 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| |||||||| || | |||||||| ||||||| || | Sbjct 9202953 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGG 9203012 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 |||||||||||| ||||||| ||| |||||||| ||||| | || | | | Sbjct 9203013 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 9203072 Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || || ||||||||||||| |||| ||||||||||| ||| Sbjct 9203073 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 9203121 >seq13 Length=361337 Score = 89.7 bits (98), Expect = 1e-15 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||| | ||| ||| |||||||||||||| || | | ||||||||| |||||| || Sbjct 180585 GGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGC 180526 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 | | ||||| |||||||| || | |||||||| || |||| || |||||||| Sbjct 180525 ACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGAGAGCGAATGGGATTAGA 180466 Query 310 TACC 313 |||| Sbjct 180465 TACC 180462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289591024384