Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq696 145 1e-32
seq9 145 1e-32
>seq696
Length=154923
Score = 145 bits (160), Expect = 1e-32
Identities = 181/248 (73%), Gaps = 20/248 (8%)
Strand=Plus/Minus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| |||||| ||| ||||||||||||| || |||||| | ||||| | ||| ||
Sbjct 106842 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGG 106784
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120
||||||||||||| |||||||||||| || || |||||||| ||
Sbjct 106783 AGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT-------- 106732
Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180
| || || || ||||||||||||||||||||||||||| ||||||||||
Sbjct 106731 -----TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAG 106683
Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240
||||||| | |||| | || | ||| ||||||||||||| ||||||||||||||
Sbjct 106682 TTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGT 106623
Query 241 TTACGGTA 248
|| ||||
Sbjct 106622 TTCGGGTA 106615
Score = 145 bits (160), Expect = 1e-32
Identities = 181/248 (73%), Gaps = 20/248 (8%)
Strand=Plus/Plus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| |||||| ||| ||||||||||||| || |||||| | ||||| | ||| ||
Sbjct 132554 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGG 132612
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120
||||||||||||| |||||||||||| || || |||||||| ||
Sbjct 132613 AGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT-------- 132664
Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180
| || || || ||||||||||||||||||||||||||| ||||||||||
Sbjct 132665 -----TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAG 132713
Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240
||||||| | |||| | || | ||| ||||||||||||| ||||||||||||||
Sbjct 132714 TTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGT 132773
Query 241 TTACGGTA 248
|| ||||
Sbjct 132774 TTCGGGTA 132781
>seq9
Length=1906741
Score = 145 bits (160), Expect = 1e-32
Identities = 181/248 (73%), Gaps = 20/248 (8%)
Strand=Plus/Plus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| |||||| ||| ||||||||||||| || |||||| | ||||| | ||| ||
Sbjct 1653387 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGG 1653445
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120
||||||||||||| |||||||||||| || || |||||||| ||
Sbjct 1653446 AGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT-------- 1653497
Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180
| || || || ||||||||||||||||||||||||||| ||||||||||
Sbjct 1653498 -----TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAG 1653546
Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240
||||||| | |||| | || | ||| ||||||||||||| ||||||||||||||
Sbjct 1653547 TTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGT 1653606
Query 241 TTACGGTA 248
|| ||||
Sbjct 1653607 TTCGGGTA 1653614
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694395318008
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |