Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq696 93.3 4e-17 seq9 93.3 4e-17 >seq696 Length=154923 Score = 93.3 bits (102), Expect = 4e-17 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 106736 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 106795 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| ||||||||||||||| Sbjct 106796 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTTAA 106841 Score = 93.3 bits (102), Expect = 4e-17 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 132660 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 132601 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| ||||||||||||||| Sbjct 132600 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTTAA 132555 >seq9 Length=1906741 Score = 93.3 bits (102), Expect = 4e-17 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 1653493 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 1653434 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| ||||||||||||||| Sbjct 1653433 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTTAA 1653388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476796785176