Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq696 273 5e-71 seq9 244 3e-62 >seq696 Length=154923 Score = 273 bits (302), Expect = 5e-71 Identities = 309/418 (74%), Gaps = 27/418 (6%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 107027 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 106968 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 106967 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 106908 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 106907 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 106848 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | ||||||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 106847 ACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 106788 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 106787 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CC 106734 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | ||| | ||||||||||||||||||| || || Sbjct 106733 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 106691 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 106690 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 106633 Score = 273 bits (302), Expect = 5e-71 Identities = 309/418 (74%), Gaps = 27/418 (6%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 132369 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 132428 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 132429 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132488 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 132489 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 132548 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | ||||||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 132549 ACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 132608 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 132609 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CC 132662 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | ||| | ||||||||||||||||||| || || Sbjct 132663 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 132705 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 132706 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 132763 >seq9 Length=1906741 Score = 244 bits (270), Expect = 3e-62 Identities = 304/419 (73%), Gaps = 33/419 (8%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 1653206 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 1653265 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAA-GGAATTTCGCTACCTTAGGACCGTT 131 ||||| ||||||| |||||||||||||||||||| |||||||||| |||||||||| Sbjct 1653266 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGGAATTTCGC-----TAGGACCGTT 1653320 Query 132 ATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACC 187 || ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 1653321 ATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACC 1653380 Query 188 CCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTT 247 | ||||||||||||||| |||||||||||| ||| |||| | ||| || || Sbjct 1653381 AACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTT 1653440 Query 248 TGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGA 307 ||| ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 1653441 TGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------C 1653494 Query 308 GCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTT 367 ||| ||| | ||| | ||||||||||||||||||| || | Sbjct 1653495 CCTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTAT 1653537 Query 368 TTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 |||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 1653538 TTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 1653596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260791224832