Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= AAMG01001138.1
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
seq696 107 2e-21
seq9 78.8 1e-12
>seq696
Length=154923
Score = 107 bits (118), Expect = 2e-21
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || |||||||||| || | | ||||||| |||
Sbjct 107056 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 106997
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 106996 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 106938
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 106937 ACAAGGAATTTCGCTACCTTAGGACCGTTA 106908
Score = 107 bits (118), Expect = 2e-21
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || |||||||||| || | | ||||||| |||
Sbjct 132340 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 132399
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 132400 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 132458
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 132459 ACAAGGAATTTCGCTACCTTAGGACCGTTA 132488
>seq9
Length=1906741
Score = 78.8 bits (86), Expect = 1e-12
Identities = 108/151 (72%), Gaps = 8/151 (5%)
Strand=Plus/Plus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || |||||||||| || | | ||||||| |||
Sbjct 1653177 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 1653236
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 1653237 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 1653295
Query 144 ACAA-GGAATTTCGCTACCTTAGGACCGTTA 173
|||| |||||||||| |||||||||||
Sbjct 1653296 ACAAGGGAATTTCGC-----TAGGACCGTTA 1653321
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547196310504
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |