Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq696 230 5e-58
seq2 221 3e-55
>seq696
Length=154923
Score = 230 bits (254), Expect = 5e-58
Identities = 253/329 (77%), Gaps = 21/329 (6%)
Strand=Plus/Minus
Query 10 CCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAA 69
||| || |||||| | | |||||||||||| || |||||||||||||||||| ||
Sbjct 101691 CCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAA 101634
Query 70 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGA 129
|||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||
Sbjct 101633 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 101574
Query 130 TCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGC 189
|||||||||| |||||| ||| |||| |||||||||| ||| ||| ||||||||||||||
Sbjct 101573 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 101514
Query 190 TAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGT 248
||||| ||| | || | | || || ||| || ||| |||| | | |
Sbjct 101513 TAATCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCT 101467
Query 249 AGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGAT 306
| | || | ||||||||| |||||||| ||| | ||| || ||| ||||| |
Sbjct 101466 CAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGT 101410
Query 307 TCCTAGGCATTACTCACCCGTCCGCCGCT 335
|| || || ||||||||||||||||| ||
Sbjct 101409 TCTTACGCGTTACTCACCCGTCCGCCACT 101381
Score = 230 bits (254), Expect = 5e-58
Identities = 253/329 (77%), Gaps = 21/329 (6%)
Strand=Plus/Plus
Query 10 CCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAA 69
||| || |||||| | | |||||||||||| || |||||||||||||||||| ||
Sbjct 137705 CCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAA 137762
Query 70 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGA 129
|||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||
Sbjct 137763 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 137822
Query 130 TCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGC 189
|||||||||| |||||| ||| |||| |||||||||| ||| ||| ||||||||||||||
Sbjct 137823 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 137882
Query 190 TAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGT 248
||||| ||| | || | | || || ||| || ||| |||| | | |
Sbjct 137883 TAATCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCT 137929
Query 249 AGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGAT 306
| | || | ||||||||| |||||||| ||| | ||| || ||| ||||| |
Sbjct 137930 CAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGT 137986
Query 307 TCCTAGGCATTACTCACCCGTCCGCCGCT 335
|| || || ||||||||||||||||| ||
Sbjct 137987 TCTTACGCGTTACTCACCCGTCCGCCACT 138015
>seq2
Length=19320864
Score = 221 bits (244), Expect = 3e-55
Identities = 251/329 (76%), Gaps = 21/329 (6%)
Strand=Plus/Minus
Query 10 CCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAA 69
||| || |||||| | | |||||||||||| || |||||||||||||||||| ||
Sbjct 9202675 CCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAA 9202618
Query 70 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGA 129
|||||||||||||||||||| ||||||||||| |||||||||||| |||||||| ||||
Sbjct 9202617 AATTCCCCACTGCTGCCTCCCATAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 9202558
Query 130 TCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGC 189
|||||||||| |||||| ||| |||| |||||||||| ||| ||| ||||||||||||||
Sbjct 9202557 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 9202498
Query 190 TAATCCGA-CCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGT 248
||||| || | || | | || || ||| || ||| |||| | | |
Sbjct 9202497 TAATCAGATGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCT 9202451
Query 249 AGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGAT 306
| | || | ||||||||| |||||||| ||| | ||| || ||| ||||| |
Sbjct 9202450 CAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGT 9202394
Query 307 TCCTAGGCATTACTCACCCGTCCGCCGCT 335
|| || || ||||||||||||||||| ||
Sbjct 9202393 TCTTACGCGTTACTCACCCGTCCGCCACT 9202365
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071992538880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |