Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq696 264 4e-68 seq9 264 4e-68 >seq696 Length=154923 Score = 264 bits (292), Expect = 4e-68 Identities = 345/470 (73%), Gaps = 27/470 (6%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 105824 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 105765 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | |||||||| | ||| ||||||| ||||||| || Sbjct 105764 CCCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 105705 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| ||| |||||||||| | ||||||| | | | | ||| Sbjct 105704 TTCACCCAAGCTTCATCCTGGTCATAGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 105645 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| |||||||||||||||||||| || || |||| Sbjct 105644 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 105592 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 105591 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA----GA 105538 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 || | ||| | |||| || | ||| || | ||||||| || ||||||||| Sbjct 105537 GCC--CAGGGCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 105485 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| | Sbjct 105484 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 105425 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 105424 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 105375 Score = 264 bits (292), Expect = 4e-68 Identities = 345/470 (73%), Gaps = 27/470 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 133572 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 133631 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | |||||||| | ||| ||||||| ||||||| || Sbjct 133632 CCCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 133691 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| ||| |||||||||| | ||||||| | | | | ||| Sbjct 133692 TTCACCCAAGCTTCATCCTGGTCATAGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 133751 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| |||||||||||||||||||| || || |||| Sbjct 133752 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 133804 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 133805 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA----GA 133858 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 || | ||| | |||| || | ||| || | ||||||| || ||||||||| Sbjct 133859 GCC--CAGGGCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 133911 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| | Sbjct 133912 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 133971 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 133972 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 134021 >seq9 Length=1906741 Score = 264 bits (292), Expect = 4e-68 Identities = 345/470 (73%), Gaps = 27/470 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 1654405 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 1654464 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | |||||||| | ||| ||||||| ||||||| || Sbjct 1654465 CCCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 1654524 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| ||| |||||||||| | ||||||| | | | | ||| Sbjct 1654525 TTCACCCAAGCTTCATCCTGGTCATAGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 1654584 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| |||||||||||||||||||| || || |||| Sbjct 1654585 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 1654637 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 1654638 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA----GA 1654691 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 || | ||| | |||| || | ||| || | ||||||| || ||||||||| Sbjct 1654692 GCC--CAGGGCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 1654744 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| | Sbjct 1654745 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 1654804 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 1654805 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 1654854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817587349504