Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= AAMG01001634.1
Length=217
Score E
Sequences producing significant alignments: (Bits) Value
seq3 80.6 3e-13
>seq3
Length=24464547
Score = 80.6 bits (88), Expect = 3e-13
Identities = 78/98 (80%), Gaps = 2/98 (2%)
Strand=Plus/Plus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71
|||||| |||||| || | |||||| | |||| |||||||||||||| | | |||||
Sbjct 24322871 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 24322929
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109
|| |||||||| ||||||||||| |||| |||| ||
Sbjct 24322930 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 24322967
Score = 80.6 bits (88), Expect = 3e-13
Identities = 78/98 (80%), Gaps = 2/98 (2%)
Strand=Plus/Plus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71
|||||| |||||| || | |||||| | |||| |||||||||||||| | | |||||
Sbjct 24332264 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 24332322
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109
|| |||||||| ||||||||||| |||| |||| ||
Sbjct 24332323 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 24332360
Score = 80.6 bits (88), Expect = 3e-13
Identities = 78/98 (80%), Gaps = 2/98 (2%)
Strand=Plus/Plus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71
|||||| |||||| || | |||||| | |||| |||||||||||||| | | |||||
Sbjct 24341742 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 24341800
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109
|| |||||||| ||||||||||| |||| |||| ||
Sbjct 24341801 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 24341838
Score = 80.6 bits (88), Expect = 3e-13
Identities = 78/98 (80%), Gaps = 2/98 (2%)
Strand=Plus/Plus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71
|||||| |||||| || | |||||| | |||| |||||||||||||| | | |||||
Sbjct 24352370 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 24352428
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109
|| |||||||| ||||||||||| |||| |||| ||
Sbjct 24352429 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 24352466
Score = 80.6 bits (88), Expect = 3e-13
Identities = 78/98 (80%), Gaps = 2/98 (2%)
Strand=Plus/Plus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71
|||||| |||||| || | |||||| | |||| |||||||||||||| | | |||||
Sbjct 24368524 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 24368582
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109
|| |||||||| ||||||||||| |||| |||| ||
Sbjct 24368583 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 24368620
Score = 80.6 bits (88), Expect = 3e-13
Identities = 78/98 (80%), Gaps = 2/98 (2%)
Strand=Plus/Plus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71
|||||| |||||| || | |||||| | |||| |||||||||||||| | | |||||
Sbjct 24377933 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 24377991
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109
|| |||||||| ||||||||||| |||| |||| ||
Sbjct 24377992 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 24378029
Score = 80.6 bits (88), Expect = 3e-13
Identities = 78/98 (80%), Gaps = 2/98 (2%)
Strand=Plus/Minus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71
|||||| |||||| || | |||||| | |||| |||||||||||||| | | |||||
Sbjct 24386086 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 24386028
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109
|| |||||||| ||||||||||| |||| |||| ||
Sbjct 24386027 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 24385990
Score = 80.6 bits (88), Expect = 3e-13
Identities = 78/98 (80%), Gaps = 2/98 (2%)
Strand=Plus/Minus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71
|||||| |||||| || | |||||| | |||| |||||||||||||| | | |||||
Sbjct 24395546 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 24395488
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109
|| |||||||| ||||||||||| |||| |||| ||
Sbjct 24395487 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 24395450
Score = 80.6 bits (88), Expect = 3e-13
Identities = 78/98 (80%), Gaps = 2/98 (2%)
Strand=Plus/Minus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71
|||||| |||||| || | |||||| | |||| |||||||||||||| | | |||||
Sbjct 24406456 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 24406398
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109
|| |||||||| ||||||||||| |||| |||| ||
Sbjct 24406397 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 24406360
Score = 80.6 bits (88), Expect = 3e-13
Identities = 78/98 (80%), Gaps = 2/98 (2%)
Strand=Plus/Minus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71
|||||| |||||| || | |||||| | |||| |||||||||||||| | | |||||
Sbjct 24415294 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 24415236
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109
|| |||||||| ||||||||||| |||| |||| ||
Sbjct 24415235 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 24415198
Score = 80.6 bits (88), Expect = 3e-13
Identities = 78/98 (80%), Gaps = 2/98 (2%)
Strand=Plus/Minus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71
|||||| |||||| || | |||||| | |||| |||||||||||||| | | |||||
Sbjct 24435029 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 24434971
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109
|| |||||||| ||||||||||| |||| |||| ||
Sbjct 24434970 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 24434933
Score = 77.0 bits (84), Expect = 4e-12
Identities = 73/91 (80%), Gaps = 2/91 (2%)
Strand=Plus/Minus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71
|||||| |||||| || | |||||| | |||| |||||||||||||| | | |||||
Sbjct 24425037 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 24424979
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAG 102
|| |||||||| ||||||||||| |||||
Sbjct 24424978 GGCTTGCTTTGAGCACTCTAATTTCTTCAAG 24424948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595195986864
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |