Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq3 127 2e-27 >seq3 Length=24464547 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 24322967 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 24322908 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 24322907 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 24322850 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 24322849 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 24322790 Query 190 T 190 | Sbjct 24322789 T 24322789 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 24332360 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 24332301 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 24332300 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 24332243 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 24332242 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 24332183 Query 190 T 190 | Sbjct 24332182 T 24332182 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 24341838 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 24341779 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 24341778 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 24341721 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 24341720 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 24341661 Query 190 T 190 | Sbjct 24341660 T 24341660 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 24378029 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 24377970 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 24377969 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 24377912 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 24377911 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 24377852 Query 190 T 190 | Sbjct 24377851 T 24377851 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 24385990 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 24386049 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 24386050 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 24386107 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 24386108 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 24386167 Query 190 T 190 | Sbjct 24386168 T 24386168 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 24395450 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 24395509 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 24395510 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 24395567 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 24395568 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 24395627 Query 190 T 190 | Sbjct 24395628 T 24395628 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 24406360 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 24406419 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 24406420 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 24406477 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 24406478 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 24406537 Query 190 T 190 | Sbjct 24406538 T 24406538 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 24415198 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 24415257 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 24415258 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 24415315 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 24415316 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 24415375 Query 190 T 190 | Sbjct 24415376 T 24415376 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 24434933 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 24434992 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 24434993 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 24435050 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 24435051 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 24435110 Query 190 T 190 | Sbjct 24435111 T 24435111 Score = 120 bits (132), Expect = 3e-25 Identities = 140/181 (77%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||| ||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 24424942 CTGTTACTT-GAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 24425000 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 24425001 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 24425058 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| || ||||||| | |||| |||||||||||||||||||| Sbjct 24425059 TTAACAGGGACAGTCGGGGGCATC-GTATTCA-TAGTCAGAGGTGAAATTCTTGGATTTA 24425116 Query 190 T 190 | Sbjct 24425117 T 24425117 Score = 118 bits (130), Expect = 1e-24 Identities = 138/181 (76%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 24352466 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 24352407 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 24352406 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 24352349 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| ||||||| |||||||||||| Sbjct 24352348 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAA-TTCTTGGATTTA 24352290 Query 190 T 190 | Sbjct 24352289 T 24352289 Score = 118 bits (130), Expect = 1e-24 Identities = 138/181 (76%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 24368620 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 24368561 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 24368560 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 24368503 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| ||||||| |||||||||||| Sbjct 24368502 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAA-TTCTTGGATTTA 24368444 Query 190 T 190 | Sbjct 24368443 T 24368443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511996547840