Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq696 269 6e-70 seq2 269 6e-70 >seq696 Length=154923 Score = 269 bits (298), Expect = 6e-70 Identities = 303/404 (75%), Gaps = 30/404 (7%) Strand=Plus/Minus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| ||||||||| | | |||||||||| ||| | |||||||| ||||||||| | || Sbjct 101693 ACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAA 101634 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 101633 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 101574 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||||||||| Sbjct 101573 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 101514 Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250 ||||| | | | | ||| || | || ||| ||| |||| || | Sbjct 101513 TAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGCTCCTCA 101465 Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310 | | || | ||||||||| |||||||||| ||| | ||||||| ||||| ||| Sbjct 101464 GCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCT 101407 Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370 | | |||||||||||||||||||| ||| || || |||| ||| Sbjct 101406 TACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCG 101364 Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | |||||||||||||||| || ||||||||||||||| ||||| Sbjct 101363 TCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 101320 Score = 269 bits (298), Expect = 6e-70 Identities = 303/404 (75%), Gaps = 30/404 (7%) Strand=Plus/Plus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| ||||||||| | | |||||||||| ||| | |||||||| ||||||||| | || Sbjct 137703 ACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAA 137762 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 137763 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 137822 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||||||||| Sbjct 137823 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 137882 Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250 ||||| | | | | ||| || | || ||| ||| |||| || | Sbjct 137883 TAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGCTCCTCA 137931 Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310 | | || | ||||||||| |||||||||| ||| | ||||||| ||||| ||| Sbjct 137932 GCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCT 137989 Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370 | | |||||||||||||||||||| ||| || || |||| ||| Sbjct 137990 TACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCG 138032 Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | |||||||||||||||| || ||||||||||||||| ||||| Sbjct 138033 TCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 138076 >seq2 Length=19320864 Score = 269 bits (298), Expect = 6e-70 Identities = 303/404 (75%), Gaps = 30/404 (7%) Strand=Plus/Minus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| ||||||||| | | |||||||||| ||| | |||||||| ||||||||| | || Sbjct 9202677 ACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAA 9202618 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||| Sbjct 9202617 AATTCCCCACTGCTGCCTCCCATAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 9202558 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||||||||| Sbjct 9202557 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 9202498 Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250 ||||| || | | | ||| || | || ||| ||| |||| || | Sbjct 9202497 TAATCAGATGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGCTCCTCA 9202449 Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310 | | || | ||||||||| |||||||||| ||| | ||||||| ||||| ||| Sbjct 9202448 GCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCT 9202391 Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370 | | |||||||||||||||||||| ||| || || |||| ||| Sbjct 9202390 TACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCG 9202348 Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | |||||||||||||||| || ||||||||||||||| ||||| Sbjct 9202347 TCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 9202304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222391492096