Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq696 277 4e-72 seq2 269 6e-70 seq13 105 2e-20 >seq696 Length=154923 Score = 277 bits (306), Expect = 4e-72 Identities = 306/405 (76%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||||||||||||||||||| ||| || ||| Sbjct 101734 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 101793 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 101794 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 101853 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 101854 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTTGAGTACGGTAGGGGCA 101913 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 101914 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 101973 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 101974 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 102033 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| |||||||| | | | ||| || | Sbjct 102034 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 102092 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 102093 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 102137 Score = 277 bits (306), Expect = 4e-72 Identities = 306/405 (76%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||||||||||||||||||| ||| || ||| Sbjct 137662 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 137603 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 137602 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 137543 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 137542 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTTGAGTACGGTAGGGGCA 137483 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 137482 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 137423 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 137422 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 137363 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| |||||||| | | | ||| || | Sbjct 137362 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 137304 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 137303 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 137259 >seq2 Length=19320864 Score = 269 bits (298), Expect = 6e-70 Identities = 305/405 (75%), Gaps = 3/405 (1%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||||||||||||||||||| ||| || ||| Sbjct 9202718 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 9202777 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| | |||||||| || ||||||| | || ||| Sbjct 9202778 GTTATCCGGAATGATTGGGCGTAAAGC-TCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 9202836 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 9202837 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTTGAGTACGGTAGGGGCA 9202896 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 9202897 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 9202956 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 9202957 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 9203016 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| |||||||| | | | ||| || | Sbjct 9203017 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 9203075 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 9203076 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 9203120 >seq13 Length=361337 Score = 105 bits (116), Expect = 2e-20 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 154 GAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATG 213 |||||| | ||| |||| | | ||||||| |||||| | ||| |||||||||||| Sbjct 180619 GAAACTACCAAGCTTGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATG 180560 Query 214 CGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTG 273 |||||| || | | |||||||| |||||| || |||||| | | |||||||||| Sbjct 180559 CGTAGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTG 180500 Query 274 AGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACC 311 || ||||||| || |||| || |||||||||||| Sbjct 180499 AGAGACGAAAGCTAGGAGAGCGAATGGGATTAGATACC 180462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203191625728